miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4020 5' -51.4 NC_001650.1 + 125512 0.65 0.992542
Target:  5'- --cGAGGAGUucuucacgcugcugGACAGGcucugcGCCGCgUCCAg -3'
miRNA:   3'- uuuUUUCUCG--------------UUGUCC------UGGCGgAGGU- -5'
4020 5' -51.4 NC_001650.1 + 124391 0.66 0.991772
Target:  5'- -----uGAGCG--AGGACCGCCcggccUCCGa -3'
miRNA:   3'- uuuuuuCUCGUugUCCUGGCGG-----AGGU- -5'
4020 5' -51.4 NC_001650.1 + 83710 0.66 0.991772
Target:  5'- cGAGAAGAGCGA-GGGGCUGaUCUCUu -3'
miRNA:   3'- uUUUUUCUCGUUgUCCUGGC-GGAGGu -5'
4020 5' -51.4 NC_001650.1 + 115237 0.66 0.991772
Target:  5'- cAGAAAGGuCAGCgAGGcccccuugACCGCCUCCc -3'
miRNA:   3'- uUUUUUCUcGUUG-UCC--------UGGCGGAGGu -5'
4020 5' -51.4 NC_001650.1 + 128600 0.66 0.991772
Target:  5'- gGAGGGAGGGCAaacgcGCGGcgccgcuaccuGACCGUCUCUc -3'
miRNA:   3'- -UUUUUUCUCGU-----UGUC-----------CUGGCGGAGGu -5'
4020 5' -51.4 NC_001650.1 + 110585 0.66 0.991657
Target:  5'- ------cAGCAACgcgaacaGGGGCCGCC-CCAg -3'
miRNA:   3'- uuuuuucUCGUUG-------UCCUGGCGGaGGU- -5'
4020 5' -51.4 NC_001650.1 + 58410 0.66 0.990565
Target:  5'- -cAGGAGAGCucGCuGGGAuugauCCGCCUUCGa -3'
miRNA:   3'- uuUUUUCUCGu-UG-UCCU-----GGCGGAGGU- -5'
4020 5' -51.4 NC_001650.1 + 90551 0.66 0.990565
Target:  5'- ----cGGGGUAGCGGGGCUGCgUgCCc -3'
miRNA:   3'- uuuuuUCUCGUUGUCCUGGCGgA-GGu -5'
4020 5' -51.4 NC_001650.1 + 108876 0.66 0.989222
Target:  5'- -uGGGAGGGCAugGaGGACgcgCGCCUCa- -3'
miRNA:   3'- uuUUUUCUCGUugU-CCUG---GCGGAGgu -5'
4020 5' -51.4 NC_001650.1 + 125140 0.66 0.989222
Target:  5'- --cAGAGGGCGAUgaGGGucuuCCGCC-CCGg -3'
miRNA:   3'- uuuUUUCUCGUUG--UCCu---GGCGGaGGU- -5'
4020 5' -51.4 NC_001650.1 + 69771 0.66 0.989222
Target:  5'- -----cGGGCcuCAGGGCgGCgUCCAg -3'
miRNA:   3'- uuuuuuCUCGuuGUCCUGgCGgAGGU- -5'
4020 5' -51.4 NC_001650.1 + 84558 0.66 0.989222
Target:  5'- --cGAGGGGCugaGGGACUGUCUCg- -3'
miRNA:   3'- uuuUUUCUCGuugUCCUGGCGGAGgu -5'
4020 5' -51.4 NC_001650.1 + 122049 0.66 0.987736
Target:  5'- --cGAGGAcGCGGCGGGGCUGgC-CCAc -3'
miRNA:   3'- uuuUUUCU-CGUUGUCCUGGCgGaGGU- -5'
4020 5' -51.4 NC_001650.1 + 63466 0.66 0.987736
Target:  5'- cAGGAAGGGCGAgAgcGGugUGaCCUCCGc -3'
miRNA:   3'- uUUUUUCUCGUUgU--CCugGC-GGAGGU- -5'
4020 5' -51.4 NC_001650.1 + 107343 0.66 0.986096
Target:  5'- -uGAAGGAGCucACGGGG--GCCUCCu -3'
miRNA:   3'- uuUUUUCUCGu-UGUCCUggCGGAGGu -5'
4020 5' -51.4 NC_001650.1 + 52567 0.66 0.986096
Target:  5'- aGGGAGGGGGCGcGCAGGcagGCgGCCgCCAg -3'
miRNA:   3'- -UUUUUUCUCGU-UGUCC---UGgCGGaGGU- -5'
4020 5' -51.4 NC_001650.1 + 16908 0.67 0.984292
Target:  5'- cGGGGGAGGGCGGCAGccCgGCCUCg- -3'
miRNA:   3'- -UUUUUUCUCGUUGUCcuGgCGGAGgu -5'
4020 5' -51.4 NC_001650.1 + 109681 0.67 0.984292
Target:  5'- ----uAGGGCcACGGuGGCgGCCUCCc -3'
miRNA:   3'- uuuuuUCUCGuUGUC-CUGgCGGAGGu -5'
4020 5' -51.4 NC_001650.1 + 76838 0.67 0.984292
Target:  5'- -----cGAGCgGAUAGGGCCGCCgCgCAg -3'
miRNA:   3'- uuuuuuCUCG-UUGUCCUGGCGGaG-GU- -5'
4020 5' -51.4 NC_001650.1 + 135820 0.67 0.984292
Target:  5'- -uGAAGGGGUugccGCAGGgcACCGuCCUCCc -3'
miRNA:   3'- uuUUUUCUCGu---UGUCC--UGGC-GGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.