miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4021 3' -57 NC_001650.1 + 134865 0.65 0.910661
Target:  5'- gGCuCUGGUCCUGAuGGccgugccacagagcUCCUUGAcCAGGc -3'
miRNA:   3'- -CG-GACCGGGACU-CC--------------AGGGACUuGUUC- -5'
4021 3' -57 NC_001650.1 + 167962 0.66 0.906466
Target:  5'- gGCg-GGCCacaUGAGGUCagUGGGCAGGc -3'
miRNA:   3'- -CGgaCCGGg--ACUCCAGggACUUGUUC- -5'
4021 3' -57 NC_001650.1 + 121816 0.66 0.906466
Target:  5'- aGCCUGGgCCUG-GGUUCCUcccCAAc -3'
miRNA:   3'- -CGGACCgGGACuCCAGGGAcuuGUUc -5'
4021 3' -57 NC_001650.1 + 62567 0.66 0.906466
Target:  5'- cGCCaGGUcguCCUcGGGGggCCUGGGCAGGa -3'
miRNA:   3'- -CGGaCCG---GGA-CUCCagGGACUUGUUC- -5'
4021 3' -57 NC_001650.1 + 1255 0.66 0.906466
Target:  5'- gGCg-GGCCacaUGAGGUCagUGGGCAGGc -3'
miRNA:   3'- -CGgaCCGGg--ACUCCAGggACUUGUUC- -5'
4021 3' -57 NC_001650.1 + 22829 0.66 0.906466
Target:  5'- aGCCUccuGCCCgagGAggcGGUCUCUGAGCuGAGc -3'
miRNA:   3'- -CGGAc--CGGGa--CU---CCAGGGACUUG-UUC- -5'
4021 3' -57 NC_001650.1 + 107657 0.66 0.906466
Target:  5'- uGCCUgccGGCCaaGAGG-CCCUGGggcGCGGa -3'
miRNA:   3'- -CGGA---CCGGgaCUCCaGGGACU---UGUUc -5'
4021 3' -57 NC_001650.1 + 124230 0.66 0.902781
Target:  5'- gGCCUGaucggggcccagaccGCCCUGcGGcugaCCCUgGAGCGGGg -3'
miRNA:   3'- -CGGAC---------------CGGGACuCCa---GGGA-CUUGUUC- -5'
4021 3' -57 NC_001650.1 + 89268 0.66 0.90028
Target:  5'- gGCCUGuGCCCaGAGGgcaggcacgaccUCCUgagGGugGAGa -3'
miRNA:   3'- -CGGAC-CGGGaCUCC------------AGGGa--CUugUUC- -5'
4021 3' -57 NC_001650.1 + 28553 0.66 0.90028
Target:  5'- aCCUGGCCUc---GUCCCgGGACGGGc -3'
miRNA:   3'- cGGACCGGGacucCAGGGaCUUGUUC- -5'
4021 3' -57 NC_001650.1 + 145953 0.66 0.90028
Target:  5'- aGCCcGGCCCgggcGAGGaagUCCCgGGACc-- -3'
miRNA:   3'- -CGGaCCGGGa---CUCC---AGGGaCUUGuuc -5'
4021 3' -57 NC_001650.1 + 83783 0.66 0.893868
Target:  5'- cGCCguccgggGGCCCcuggGAGGg-UCUGAugGAGg -3'
miRNA:   3'- -CGGa------CCGGGa---CUCCagGGACUugUUC- -5'
4021 3' -57 NC_001650.1 + 60797 0.66 0.893868
Target:  5'- uGCCacGCCCUGGuGGUUgCUG-GCGAGg -3'
miRNA:   3'- -CGGacCGGGACU-CCAGgGACuUGUUC- -5'
4021 3' -57 NC_001650.1 + 60000 0.66 0.893868
Target:  5'- gGCCccgaucaGGCCCUGcacGUCCCUGAAgGu- -3'
miRNA:   3'- -CGGa------CCGGGACuc-CAGGGACUUgUuc -5'
4021 3' -57 NC_001650.1 + 134403 0.66 0.891241
Target:  5'- cCCaGaGCCCgaccaccgaugugGAGGaggCCCUGGACGAGg -3'
miRNA:   3'- cGGaC-CGGGa------------CUCCa--GGGACUUGUUC- -5'
4021 3' -57 NC_001650.1 + 64517 0.66 0.887235
Target:  5'- uCCUGaGCCCcgUGGGGcCCCUGGuuCAGa -3'
miRNA:   3'- cGGAC-CGGG--ACUCCaGGGACUu-GUUc -5'
4021 3' -57 NC_001650.1 + 127070 0.66 0.886559
Target:  5'- cGCCgGGCCC-GGGGUCUCcacuagUGAaaaagaaGCAGGa -3'
miRNA:   3'- -CGGaCCGGGaCUCCAGGG------ACU-------UGUUC- -5'
4021 3' -57 NC_001650.1 + 109300 0.66 0.880383
Target:  5'- cCCUGGCCaaGA---UCCUGAACAGGa -3'
miRNA:   3'- cGGACCGGgaCUccaGGGACUUGUUC- -5'
4021 3' -57 NC_001650.1 + 71334 0.66 0.880383
Target:  5'- aCCUGcGCCCUcAGGUCCCUcuGCc-- -3'
miRNA:   3'- cGGAC-CGGGAcUCCAGGGAcuUGuuc -5'
4021 3' -57 NC_001650.1 + 129974 0.67 0.873317
Target:  5'- cGCCcguggcgcgGGCCCUGAGGcUgCUGAgggcggcgcgggACGAGg -3'
miRNA:   3'- -CGGa--------CCGGGACUCCaGgGACU------------UGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.