miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4021 5' -55.4 NC_001650.1 + 88491 0.66 0.953317
Target:  5'- cUCCgggCGGggcGGGGAcGCCgggCGGGAggaagcggGGGCg -3'
miRNA:   3'- -AGGa--GCCa--CUCCU-CGGa--GUUCU--------UCCG- -5'
4021 5' -55.4 NC_001650.1 + 153996 0.66 0.953317
Target:  5'- cUCUgagCGG-GAGGGGUCgcccgaGAGGAGGUc -3'
miRNA:   3'- -AGGa--GCCaCUCCUCGGag----UUCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 62882 0.66 0.953317
Target:  5'- gCCUCgcgGGUGAGGccGCacgCGuGGAAGGCg -3'
miRNA:   3'- aGGAG---CCACUCCu-CGga-GU-UCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 126601 0.66 0.949256
Target:  5'- aUCUCGGgauagacgcagGGGGGGCg--AAGAGGGCg -3'
miRNA:   3'- aGGAGCCa----------CUCCUCGgagUUCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 83397 0.66 0.948837
Target:  5'- gCCgUCGGUaccagcuGAGGAcGCCcCGuGAGGGCu -3'
miRNA:   3'- aGG-AGCCA-------CUCCU-CGGaGUuCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 68194 0.66 0.944967
Target:  5'- cCCcCGaGUGgauAGGGGCCcucuUUAGGGAGGCc -3'
miRNA:   3'- aGGaGC-CAC---UCCUCGG----AGUUCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 142394 0.66 0.944967
Target:  5'- cCCggggCGGUGggagagGGGGGUCUCuacgggcccGAGGGCa -3'
miRNA:   3'- aGGa---GCCAC------UCCUCGGAGuu-------CUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 42562 0.66 0.944967
Target:  5'- gCCUCGGggccugGGGGuguuuuGCUUCGcgcGggGGCc -3'
miRNA:   3'- aGGAGCCa-----CUCCu-----CGGAGUu--CuuCCG- -5'
4021 5' -55.4 NC_001650.1 + 47476 0.66 0.944967
Target:  5'- cCCgaucCGGUGAGGGGgggaagaaCUCAgAGAGGGg -3'
miRNA:   3'- aGGa---GCCACUCCUCg-------GAGU-UCUUCCg -5'
4021 5' -55.4 NC_001650.1 + 157138 0.66 0.944967
Target:  5'- gCCUgggccaggcUGGUGuAGuGGGCCUCGAaGAGGUa -3'
miRNA:   3'- aGGA---------GCCAC-UC-CUCGGAGUUcUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 135943 0.66 0.944967
Target:  5'- gCCUgaGGUGGGGGGCaggCAcggacAGAGGGg -3'
miRNA:   3'- aGGAg-CCACUCCUCGga-GU-----UCUUCCg -5'
4021 5' -55.4 NC_001650.1 + 21359 0.66 0.940447
Target:  5'- uUCCUCuuuuaaGAGG-GCCagAGGggGGCg -3'
miRNA:   3'- -AGGAGcca---CUCCuCGGagUUCuuCCG- -5'
4021 5' -55.4 NC_001650.1 + 132383 0.66 0.940447
Target:  5'- cCCUCGGccgagcucuuUGAcGGccuGGCCgggcgCGAGGAGGUg -3'
miRNA:   3'- aGGAGCC----------ACU-CC---UCGGa----GUUCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 147648 0.66 0.940447
Target:  5'- -gCUCGG-GGGuGAGCCggUggGAAGcGCg -3'
miRNA:   3'- agGAGCCaCUC-CUCGGa-GuuCUUC-CG- -5'
4021 5' -55.4 NC_001650.1 + 42511 0.66 0.935694
Target:  5'- gCUUUGcguGUGAGGGGUgUUggGggGGUg -3'
miRNA:   3'- aGGAGC---CACUCCUCGgAGuuCuuCCG- -5'
4021 5' -55.4 NC_001650.1 + 62576 0.66 0.935694
Target:  5'- gUCCUCGG---GGGGCCUgggCAGGAAGa- -3'
miRNA:   3'- -AGGAGCCacuCCUCGGA---GUUCUUCcg -5'
4021 5' -55.4 NC_001650.1 + 39591 0.66 0.935694
Target:  5'- cUCCacgCGGUGGcccaccGGuGUUUUGAGAAGGCu -3'
miRNA:   3'- -AGGa--GCCACU------CCuCGGAGUUCUUCCG- -5'
4021 5' -55.4 NC_001650.1 + 327 0.66 0.930708
Target:  5'- aUCUUGGUGGGcGAccaCCUCGGGGGuGGCc -3'
miRNA:   3'- aGGAGCCACUC-CUc--GGAGUUCUU-CCG- -5'
4021 5' -55.4 NC_001650.1 + 167034 0.66 0.930708
Target:  5'- aUCUUGGUGGGcGAccaCCUCGGGGGuGGCc -3'
miRNA:   3'- aGGAGCCACUC-CUc--GGAGUUCUU-CCG- -5'
4021 5' -55.4 NC_001650.1 + 115996 0.66 0.930708
Target:  5'- cCCUCGGccgucuccacccaGAGGGGCUccaacguguccugguUCAAGgcGGCc -3'
miRNA:   3'- aGGAGCCa------------CUCCUCGG---------------AGUUCuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.