miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4022 3' -57.5 NC_001650.1 + 120545 0.66 0.889313
Target:  5'- cGACCUGCAgGgcgCGGUGGGGCuucugaccucgGCCg -3'
miRNA:   3'- -CUGGACGUgCa--GUCGCUCUGca---------CGGa -5'
4022 3' -57.5 NC_001650.1 + 35261 0.66 0.876266
Target:  5'- aGCCUguggagcGCGgGUgGGCGGGGCGgGCCg -3'
miRNA:   3'- cUGGA-------CGUgCAgUCGCUCUGCaCGGa -5'
4022 3' -57.5 NC_001650.1 + 76677 0.66 0.869819
Target:  5'- -gUCaGCACGUCAGUGAGuaucucagccGCGUcGCCg -3'
miRNA:   3'- cuGGaCGUGCAGUCGCUC----------UGCA-CGGa -5'
4022 3' -57.5 NC_001650.1 + 124108 0.66 0.869819
Target:  5'- cGGCCUcCGCGggCGGCGGGuCGgGCCa -3'
miRNA:   3'- -CUGGAcGUGCa-GUCGCUCuGCaCGGa -5'
4022 3' -57.5 NC_001650.1 + 108669 0.66 0.862459
Target:  5'- cGACCUGCACGgccuGCuGGACcugGCCg -3'
miRNA:   3'- -CUGGACGUGCagu-CGcUCUGca-CGGa -5'
4022 3' -57.5 NC_001650.1 + 108826 0.66 0.854899
Target:  5'- uGGCCcGCGCGUgggAGCGGGcCGUGCa- -3'
miRNA:   3'- -CUGGaCGUGCAg--UCGCUCuGCACGga -5'
4022 3' -57.5 NC_001650.1 + 28664 0.67 0.847144
Target:  5'- uGGCCgagcGCGCGgcCAGgGAGAcCGUGCUg -3'
miRNA:   3'- -CUGGa---CGUGCa-GUCgCUCU-GCACGGa -5'
4022 3' -57.5 NC_001650.1 + 71981 0.67 0.839201
Target:  5'- uGCCaGCACcUgGGCGGGGCG-GCCg -3'
miRNA:   3'- cUGGaCGUGcAgUCGCUCUGCaCGGa -5'
4022 3' -57.5 NC_001650.1 + 134586 0.67 0.831076
Target:  5'- aGGCCUGguUGUagaggGGCGAGAUGUaCCUg -3'
miRNA:   3'- -CUGGACguGCAg----UCGCUCUGCAcGGA- -5'
4022 3' -57.5 NC_001650.1 + 6091 0.67 0.814308
Target:  5'- gGGCUgggugGCGCG-CGGCGAGAgG-GCCg -3'
miRNA:   3'- -CUGGa----CGUGCaGUCGCUCUgCaCGGa -5'
4022 3' -57.5 NC_001650.1 + 172798 0.67 0.814308
Target:  5'- gGGCUgggugGCGCG-CGGCGAGAgG-GCCg -3'
miRNA:   3'- -CUGGa----CGUGCaGUCGCUCUgCaCGGa -5'
4022 3' -57.5 NC_001650.1 + 41605 0.68 0.805681
Target:  5'- cGGCCUGCugcuUGaCGGCGGGcGCGUGCa- -3'
miRNA:   3'- -CUGGACGu---GCaGUCGCUC-UGCACGga -5'
4022 3' -57.5 NC_001650.1 + 55621 0.68 0.787979
Target:  5'- cACCUGgguCACGggcUCGGCGGGGCGguggGCCc -3'
miRNA:   3'- cUGGAC---GUGC---AGUCGCUCUGCa---CGGa -5'
4022 3' -57.5 NC_001650.1 + 57872 0.68 0.778921
Target:  5'- gGGCCUGCGCGUCAccuGgGGGugGUaggGCg- -3'
miRNA:   3'- -CUGGACGUGCAGU---CgCUCugCA---CGga -5'
4022 3' -57.5 NC_001650.1 + 30519 0.68 0.760432
Target:  5'- -cCCUGCGCGUCcugcuucGCgGAGGCG-GCCa -3'
miRNA:   3'- cuGGACGUGCAGu------CG-CUCUGCaCGGa -5'
4022 3' -57.5 NC_001650.1 + 78068 0.68 0.760432
Target:  5'- -cCCUGUACGUguGUaGGGCGUGCg- -3'
miRNA:   3'- cuGGACGUGCAguCGcUCUGCACGga -5'
4022 3' -57.5 NC_001650.1 + 26915 0.68 0.759495
Target:  5'- cGACCUGgGCGagGGCGggggcggGGAgGUGCCc -3'
miRNA:   3'- -CUGGACgUGCagUCGC-------UCUgCACGGa -5'
4022 3' -57.5 NC_001650.1 + 27097 0.69 0.751019
Target:  5'- uGGCCcagGCGC-UCAGggucaGGGACGUGCCg -3'
miRNA:   3'- -CUGGa--CGUGcAGUCg----CUCUGCACGGa -5'
4022 3' -57.5 NC_001650.1 + 106961 0.69 0.741504
Target:  5'- aGCCUGCAggaGUCGGUGGucuCGUGCCc -3'
miRNA:   3'- cUGGACGUg--CAGUCGCUcu-GCACGGa -5'
4022 3' -57.5 NC_001650.1 + 22657 0.69 0.741504
Target:  5'- cGCCUcGCACGaCAGCGGccGGCGgcugGCCUc -3'
miRNA:   3'- cUGGA-CGUGCaGUCGCU--CUGCa---CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.