miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4022 5' -51.3 NC_001650.1 + 36239 0.66 0.994728
Target:  5'- -cGGGCGACCgagcgcaggugCGUCgCGCgUACAGGGc -3'
miRNA:   3'- caUCUGUUGGa----------GUAG-GUG-AUGUCCCa -5'
4022 5' -51.3 NC_001650.1 + 70915 0.66 0.994728
Target:  5'- -gGGACAACCUggugacggcCGUCaGCUACGGGcGg -3'
miRNA:   3'- caUCUGUUGGA---------GUAGgUGAUGUCC-Ca -5'
4022 5' -51.3 NC_001650.1 + 103585 0.66 0.994728
Target:  5'- -gGGACGcACCcgcggUCAUCgCACUgcgucaGCAGGGUg -3'
miRNA:   3'- caUCUGU-UGG-----AGUAG-GUGA------UGUCCCA- -5'
4022 5' -51.3 NC_001650.1 + 64233 0.66 0.993887
Target:  5'- -cAGGCAGCC----CCugUACGGGGa -3'
miRNA:   3'- caUCUGUUGGaguaGGugAUGUCCCa -5'
4022 5' -51.3 NC_001650.1 + 49331 0.66 0.993887
Target:  5'- cUGGGCGACCUgA-CCGCcucuCGGGGg -3'
miRNA:   3'- cAUCUGUUGGAgUaGGUGau--GUCCCa -5'
4022 5' -51.3 NC_001650.1 + 93678 0.66 0.99294
Target:  5'- gGUAcGugGACCUCAaCCACaACuGGGc -3'
miRNA:   3'- -CAU-CugUUGGAGUaGGUGaUGuCCCa -5'
4022 5' -51.3 NC_001650.1 + 65181 0.66 0.99294
Target:  5'- aUAGACAcCCUCAagaUCUcg-GCGGGGUg -3'
miRNA:   3'- cAUCUGUuGGAGU---AGGugaUGUCCCA- -5'
4022 5' -51.3 NC_001650.1 + 157190 0.66 0.99294
Target:  5'- cGUGGuaaaaguACCUCAgguuuUCC-CUGCAGGGg -3'
miRNA:   3'- -CAUCugu----UGGAGU-----AGGuGAUGUCCCa -5'
4022 5' -51.3 NC_001650.1 + 44692 0.66 0.99294
Target:  5'- -aGGGCuACCUgugucaCAUCUggagcGCUGCAGGGUc -3'
miRNA:   3'- caUCUGuUGGA------GUAGG-----UGAUGUCCCA- -5'
4022 5' -51.3 NC_001650.1 + 65273 0.66 0.99294
Target:  5'- cGUAGACAccaggGCCUaCGUcaCCACguuCGGGGa -3'
miRNA:   3'- -CAUCUGU-----UGGA-GUA--GGUGau-GUCCCa -5'
4022 5' -51.3 NC_001650.1 + 85153 0.66 0.99294
Target:  5'- cGUGGACuGCCagaggcuggCAUCCguGCUGCAGaGGg -3'
miRNA:   3'- -CAUCUGuUGGa--------GUAGG--UGAUGUC-CCa -5'
4022 5' -51.3 NC_001650.1 + 116051 0.66 0.99294
Target:  5'- -aGGGCuucuCCUCGUCCGgcacCAGGGUg -3'
miRNA:   3'- caUCUGuu--GGAGUAGGUgau-GUCCCA- -5'
4022 5' -51.3 NC_001650.1 + 114304 0.66 0.991881
Target:  5'- -aGGACGGCCcUAUCCAUgACGGaGGg -3'
miRNA:   3'- caUCUGUUGGaGUAGGUGaUGUC-CCa -5'
4022 5' -51.3 NC_001650.1 + 51121 0.66 0.991881
Target:  5'- -gAGGCcACCgucccCAUCCACUACuacGGGc -3'
miRNA:   3'- caUCUGuUGGa----GUAGGUGAUGu--CCCa -5'
4022 5' -51.3 NC_001650.1 + 108889 0.66 0.990699
Target:  5'- -aGGACGcgcGCCUCAccgccugcgUCCACUACGcGGa -3'
miRNA:   3'- caUCUGU---UGGAGU---------AGGUGAUGUcCCa -5'
4022 5' -51.3 NC_001650.1 + 109825 0.66 0.990699
Target:  5'- -gGGGUGACCUCGUCCAggauggcCAGGGUg -3'
miRNA:   3'- caUCUGUUGGAGUAGGUgau----GUCCCA- -5'
4022 5' -51.3 NC_001650.1 + 138890 0.66 0.990699
Target:  5'- -gGGGCGAgCUgcuacagggggaCAaCCGCUACAGGGg -3'
miRNA:   3'- caUCUGUUgGA------------GUaGGUGAUGUCCCa -5'
4022 5' -51.3 NC_001650.1 + 37670 0.67 0.989386
Target:  5'- gGUGGACAuCCUCAaCgacaGCUACAGGa- -3'
miRNA:   3'- -CAUCUGUuGGAGUaGg---UGAUGUCCca -5'
4022 5' -51.3 NC_001650.1 + 14091 0.67 0.989386
Target:  5'- cGUGGGUAGCUUCAUUCGCgaaaAGGGg -3'
miRNA:   3'- -CAUCUGUUGGAGUAGGUGaug-UCCCa -5'
4022 5' -51.3 NC_001650.1 + 137915 0.67 0.989386
Target:  5'- --cGAUGACUUCggCCGCaACGGGGg -3'
miRNA:   3'- cauCUGUUGGAGuaGGUGaUGUCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.