miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4024 3' -56.4 NC_001650.1 + 178314 0.66 0.90841
Target:  5'- ----aGGCCCUGGuuGCUGggCAGa-- -3'
miRNA:   3'- aguaaCCGGGGCCggCGACa-GUUagu -5'
4024 3' -56.4 NC_001650.1 + 177572 0.66 0.90841
Target:  5'- ----aGGCCCUGGuuGCUGggCAGa-- -3'
miRNA:   3'- aguaaCCGGGGCCggCGACa-GUUagu -5'
4024 3' -56.4 NC_001650.1 + 11607 0.66 0.90841
Target:  5'- ----aGGCCCUGGuuGCUGggCAGa-- -3'
miRNA:   3'- aguaaCCGGGGCCggCGACa-GUUagu -5'
4024 3' -56.4 NC_001650.1 + 10987 0.66 0.90841
Target:  5'- ----aGGCCCUGGuuGCUGggCAGa-- -3'
miRNA:   3'- aguaaCCGGGGCCggCGACa-GUUagu -5'
4024 3' -56.4 NC_001650.1 + 10865 0.66 0.90841
Target:  5'- ----aGGCCCUGGuuGCUGggCAGa-- -3'
miRNA:   3'- aguaaCCGGGGCCggCGACa-GUUagu -5'
4024 3' -56.4 NC_001650.1 + 177694 0.66 0.90841
Target:  5'- ----aGGCCCUGGuuGCUGggCAGa-- -3'
miRNA:   3'- aguaaCCGGGGCCggCGACa-GUUagu -5'
4024 3' -56.4 NC_001650.1 + 164917 0.67 0.882417
Target:  5'- ----gGGCCCCaccgcGGCCGCcGcCAGUCu -3'
miRNA:   3'- aguaaCCGGGG-----CCGGCGaCaGUUAGu -5'
4024 3' -56.4 NC_001650.1 + 161702 0.67 0.868095
Target:  5'- ---gUGGCCCCGGUgaaGCUGUgGGgccUCGa -3'
miRNA:   3'- aguaACCGGGGCCGg--CGACAgUU---AGU- -5'
4024 3' -56.4 NC_001650.1 + 73417 0.67 0.868095
Target:  5'- ---cUGGCUCUgaGGCUGCUGgCGAUCGc -3'
miRNA:   3'- aguaACCGGGG--CCGGCGACaGUUAGU- -5'
4024 3' -56.4 NC_001650.1 + 115223 0.67 0.860618
Target:  5'- ----aGG-CCCGGCCGCUG-CAgaaagGUCAg -3'
miRNA:   3'- aguaaCCgGGGCCGGCGACaGU-----UAGU- -5'
4024 3' -56.4 NC_001650.1 + 60268 0.68 0.836994
Target:  5'- ---aUGGCCgCCGGCUGCUG-CGGc-- -3'
miRNA:   3'- aguaACCGG-GGCCGGCGACaGUUagu -5'
4024 3' -56.4 NC_001650.1 + 144592 0.68 0.820318
Target:  5'- ---cUGGCCCgGGUCcCUGUCAuccAUCAc -3'
miRNA:   3'- aguaACCGGGgCCGGcGACAGU---UAGU- -5'
4024 3' -56.4 NC_001650.1 + 138145 0.7 0.698537
Target:  5'- cUCAUUGGCCaaCCGGCC-C-GUCAcUCAa -3'
miRNA:   3'- -AGUAACCGG--GGCCGGcGaCAGUuAGU- -5'
4024 3' -56.4 NC_001650.1 + 161557 0.71 0.658289
Target:  5'- ----aGGCCagccgCCGGCCGCUGUCGu--- -3'
miRNA:   3'- aguaaCCGG-----GGCCGGCGACAGUuagu -5'
4024 3' -56.4 NC_001650.1 + 123823 0.72 0.597449
Target:  5'- ---aUGGCCCUGGCCGUgg-UGAUCAa -3'
miRNA:   3'- aguaACCGGGGCCGGCGacaGUUAGU- -5'
4024 3' -56.4 NC_001650.1 + 181714 0.73 0.557289
Target:  5'- uUCAUUGGCCCUgaguuuaaaGGgUGCUGUCAAa-- -3'
miRNA:   3'- -AGUAACCGGGG---------CCgGCGACAGUUagu -5'
4024 3' -56.4 NC_001650.1 + 15007 0.73 0.557289
Target:  5'- uUCAUUGGCCCUgaguuuaaaGGgUGCUGUCAAa-- -3'
miRNA:   3'- -AGUAACCGGGG---------CCgGCGACAGUUagu -5'
4024 3' -56.4 NC_001650.1 + 146897 0.76 0.399335
Target:  5'- cUCAUUGGCCCCGGgauCUGUCcAUCAa -3'
miRNA:   3'- -AGUAACCGGGGCCggcGACAGuUAGU- -5'
4024 3' -56.4 NC_001650.1 + 43410 0.76 0.374509
Target:  5'- cUCAUUGGCCggCGGa-GCUGUCAAUCAa -3'
miRNA:   3'- -AGUAACCGGg-GCCggCGACAGUUAGU- -5'
4024 3' -56.4 NC_001650.1 + 53642 0.8 0.236771
Target:  5'- cUCAUUGGCCgaGGgaGCUGUCAAUCAa -3'
miRNA:   3'- -AGUAACCGGggCCggCGACAGUUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.