miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4024 5' -58.5 NC_001650.1 + 52947 0.66 0.85019
Target:  5'- --gGAggGGCCgGGGGUUCccaGACCu -3'
miRNA:   3'- gaaCUaaCCGGgCCCCGAGac-CUGGu -5'
4024 5' -58.5 NC_001650.1 + 78645 0.66 0.85019
Target:  5'- -gUGGUgcuGCCCGaGGCguucCUGGACCGc -3'
miRNA:   3'- gaACUAac-CGGGCcCCGa---GACCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 52598 0.66 0.841572
Target:  5'- -------cGCCCGGGaGCUCUGGgauggggGCCAc -3'
miRNA:   3'- gaacuaacCGGGCCC-CGAGACC-------UGGU- -5'
4024 5' -58.5 NC_001650.1 + 19595 0.66 0.826172
Target:  5'- ------cGGCCCGGGGCggcguuccgCUcGGGCUg -3'
miRNA:   3'- gaacuaaCCGGGCCCCGa--------GA-CCUGGu -5'
4024 5' -58.5 NC_001650.1 + 86724 0.66 0.817819
Target:  5'- ----cUUGGCCUGuGGGCuacUCUGGcgGCCAu -3'
miRNA:   3'- gaacuAACCGGGC-CCCG---AGACC--UGGU- -5'
4024 5' -58.5 NC_001650.1 + 145489 0.67 0.809306
Target:  5'- -cUGGgaaagGGCCgGGGGCUcCUGG-UCAg -3'
miRNA:   3'- gaACUaa---CCGGgCCCCGA-GACCuGGU- -5'
4024 5' -58.5 NC_001650.1 + 63989 0.67 0.809306
Target:  5'- cCUUGGUguuuuacugGGCCgGGGGCUaggguaUGaaGACCAa -3'
miRNA:   3'- -GAACUAa--------CCGGgCCCCGAg-----AC--CUGGU- -5'
4024 5' -58.5 NC_001650.1 + 27952 0.67 0.800638
Target:  5'- -cUGG-UGGCCCGcGGGCUggugaccgcGGGCCAc -3'
miRNA:   3'- gaACUaACCGGGC-CCCGAga-------CCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 41712 0.67 0.800638
Target:  5'- --aGAcuccGCUCGGuGCUCUGGACCAc -3'
miRNA:   3'- gaaCUaac-CGGGCCcCGAGACCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 23340 0.67 0.800638
Target:  5'- ------cGGCgUGGGGCccCUGGACCu -3'
miRNA:   3'- gaacuaaCCGgGCCCCGa-GACCUGGu -5'
4024 5' -58.5 NC_001650.1 + 59723 0.67 0.791826
Target:  5'- -aUGAggGGCUacaGGGGCgUCgagGGGCCc -3'
miRNA:   3'- gaACUaaCCGGg--CCCCG-AGa--CCUGGu -5'
4024 5' -58.5 NC_001650.1 + 4673 0.67 0.790937
Target:  5'- uUUGgg-GGUCCGGGGggucuuaaagaccCUCUaGGACCAc -3'
miRNA:   3'- gAACuaaCCGGGCCCC-------------GAGA-CCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 171380 0.67 0.790937
Target:  5'- uUUGgg-GGUCCGGGGggucuuaaagaccCUCUaGGACCAc -3'
miRNA:   3'- gAACuaaCCGGGCCCC-------------GAGA-CCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 141573 0.67 0.782876
Target:  5'- gCUUGcgUGGCCCcGGGCacgugugucgcCUGGugCGg -3'
miRNA:   3'- -GAACuaACCGGGcCCCGa----------GACCugGU- -5'
4024 5' -58.5 NC_001650.1 + 135931 0.67 0.782876
Target:  5'- aCUUGGccaccagcUUGGCCCuGuGGGCUaggGGGCUAg -3'
miRNA:   3'- -GAACU--------AACCGGG-C-CCCGAga-CCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 65590 0.67 0.777443
Target:  5'- --aGGgcGGCUCGGGGCggauggagagcgggCUGGACUu -3'
miRNA:   3'- gaaCUaaCCGGGCCCCGa-------------GACCUGGu -5'
4024 5' -58.5 NC_001650.1 + 53682 0.67 0.772881
Target:  5'- -cUGAUUGGCCgagaGGgccagccGGCUCUcGACCAa -3'
miRNA:   3'- gaACUAACCGGg---CC-------CCGAGAcCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 95728 0.68 0.745866
Target:  5'- --gGGuUUGGCCCGGGGCgg-GGaaacuccccgcGCCAg -3'
miRNA:   3'- gaaCU-AACCGGGCCCCGagaCC-----------UGGU- -5'
4024 5' -58.5 NC_001650.1 + 47633 0.68 0.745866
Target:  5'- uUUGucuucgGGCCUGGGGCUggugcggcgaUGGACCc -3'
miRNA:   3'- gAACuaa---CCGGGCCCCGAg---------ACCUGGu -5'
4024 5' -58.5 NC_001650.1 + 80689 0.68 0.736355
Target:  5'- -----gUGGCCgGGGGCUacacGGACCc -3'
miRNA:   3'- gaacuaACCGGgCCCCGAga--CCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.