Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4024 | 5' | -58.5 | NC_001650.1 | + | 146975 | 1.08 | 0.002118 |
Target: 5'- cCUUGAUUGGCCCGGGGCUCUGGACCAa -3' miRNA: 3'- -GAACUAACCGGGCCCCGAGACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 21676 | 0.76 | 0.29657 |
Target: 5'- ------aGGCCCGGGGC-CUGGGCUg -3' miRNA: 3'- gaacuaaCCGGGCCCCGaGACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 53720 | 0.74 | 0.394039 |
Target: 5'- --aGAgcgcGGCCgaGaGGGCUCUGGACCAa -3' miRNA: 3'- gaaCUaa--CCGGg-C-CCCGAGACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 130028 | 0.73 | 0.463485 |
Target: 5'- -cUGGgcGGCCCGGGaGCUCcaccggcgacUGGACCc -3' miRNA: 3'- gaACUaaCCGGGCCC-CGAG----------ACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 82445 | 0.72 | 0.500525 |
Target: 5'- -cUGGUaccugGGCUCGGGGUcccugaUCUGGACCc -3' miRNA: 3'- gaACUAa----CCGGGCCCCG------AGACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 138226 | 0.71 | 0.578054 |
Target: 5'- -gUGAUUGGCCCuGcGCUCUcGGCCAa -3' miRNA: 3'- gaACUAACCGGGcCcCGAGAcCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 136222 | 0.71 | 0.578054 |
Target: 5'- aCUUGAgcGGcCCCGGGGCguagucCUGcGCCAu -3' miRNA: 3'- -GAACUaaCC-GGGCCCCGa-----GACcUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 43488 | 0.71 | 0.578054 |
Target: 5'- --aGAgcgcGGCUgaGaGGGCUCUGGACCAa -3' miRNA: 3'- gaaCUaa--CCGGg-C-CCCGAGACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 89170 | 0.71 | 0.538815 |
Target: 5'- --gGGUccUGuGCCCGGGGCUCcgGGGCg- -3' miRNA: 3'- gaaCUA--AC-CGGGCCCCGAGa-CCUGgu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 165737 | 0.7 | 0.606891 |
Target: 5'- --cGGggGGCCCGGGGCggCUcuuaggccuagggGGGCCu -3' miRNA: 3'- gaaCUaaCCGGGCCCCGa-GA-------------CCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 136090 | 0.7 | 0.607889 |
Target: 5'- --aGA-UGGCCgCGGGGgUCaUGGACCc -3' miRNA: 3'- gaaCUaACCGG-GCCCCgAG-ACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 133872 | 0.68 | 0.71708 |
Target: 5'- --aGAagGGgucCCCGGGGCUCgaggaggccgGGGCCGg -3' miRNA: 3'- gaaCUaaCC---GGGCCCCGAGa---------CCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 60506 | 0.68 | 0.736355 |
Target: 5'- --cGAUgucccUGGCgCCGGGGUcCUGGGCa- -3' miRNA: 3'- gaaCUA-----ACCG-GGCCCCGaGACCUGgu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 80689 | 0.68 | 0.736355 |
Target: 5'- -----gUGGCCgGGGGCUacacGGACCc -3' miRNA: 3'- gaacuaACCGGgCCCCGAga--CCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 95728 | 0.68 | 0.745866 |
Target: 5'- --gGGuUUGGCCCGGGGCgg-GGaaacuccccgcGCCAg -3' miRNA: 3'- gaaCU-AACCGGGCCCCGagaCC-----------UGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 159509 | 0.68 | 0.736355 |
Target: 5'- -cUGAUcacCCCGGGGUUCcugcugUGGACCAg -3' miRNA: 3'- gaACUAaccGGGCCCCGAG------ACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 47633 | 0.68 | 0.745866 |
Target: 5'- uUUGucuucgGGCCUGGGGCUggugcggcgaUGGACCc -3' miRNA: 3'- gAACuaa---CCGGGCCCCGAg---------ACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 145489 | 0.67 | 0.809306 |
Target: 5'- -cUGGgaaagGGCCgGGGGCUcCUGG-UCAg -3' miRNA: 3'- gaACUaa---CCGGgCCCCGA-GACCuGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 23340 | 0.67 | 0.800638 |
Target: 5'- ------cGGCgUGGGGCccCUGGACCu -3' miRNA: 3'- gaacuaaCCGgGCCCCGa-GACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 41712 | 0.67 | 0.800638 |
Target: 5'- --aGAcuccGCUCGGuGCUCUGGACCAc -3' miRNA: 3'- gaaCUaac-CGGGCCcCGAGACCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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