miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4024 5' -58.5 NC_001650.1 + 89170 0.71 0.538815
Target:  5'- --gGGUccUGuGCCCGGGGCUCcgGGGCg- -3'
miRNA:   3'- gaaCUA--AC-CGGGCCCCGAGa-CCUGgu -5'
4024 5' -58.5 NC_001650.1 + 95728 0.68 0.745866
Target:  5'- --gGGuUUGGCCCGGGGCgg-GGaaacuccccgcGCCAg -3'
miRNA:   3'- gaaCU-AACCGGGCCCCGagaCC-----------UGGU- -5'
4024 5' -58.5 NC_001650.1 + 130028 0.73 0.463485
Target:  5'- -cUGGgcGGCCCGGGaGCUCcaccggcgacUGGACCc -3'
miRNA:   3'- gaACUaaCCGGGCCC-CGAG----------ACCUGGu -5'
4024 5' -58.5 NC_001650.1 + 133872 0.68 0.71708
Target:  5'- --aGAagGGgucCCCGGGGCUCgaggaggccgGGGCCGg -3'
miRNA:   3'- gaaCUaaCC---GGGCCCCGAGa---------CCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 135931 0.67 0.782876
Target:  5'- aCUUGGccaccagcUUGGCCCuGuGGGCUaggGGGCUAg -3'
miRNA:   3'- -GAACU--------AACCGGG-C-CCCGAga-CCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 136090 0.7 0.607889
Target:  5'- --aGA-UGGCCgCGGGGgUCaUGGACCc -3'
miRNA:   3'- gaaCUaACCGG-GCCCCgAG-ACCUGGu -5'
4024 5' -58.5 NC_001650.1 + 136222 0.71 0.578054
Target:  5'- aCUUGAgcGGcCCCGGGGCguagucCUGcGCCAu -3'
miRNA:   3'- -GAACUaaCC-GGGCCCCGa-----GACcUGGU- -5'
4024 5' -58.5 NC_001650.1 + 138226 0.71 0.578054
Target:  5'- -gUGAUUGGCCCuGcGCUCUcGGCCAa -3'
miRNA:   3'- gaACUAACCGGGcCcCGAGAcCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 141573 0.67 0.782876
Target:  5'- gCUUGcgUGGCCCcGGGCacgugugucgcCUGGugCGg -3'
miRNA:   3'- -GAACuaACCGGGcCCCGa----------GACCugGU- -5'
4024 5' -58.5 NC_001650.1 + 145489 0.67 0.809306
Target:  5'- -cUGGgaaagGGCCgGGGGCUcCUGG-UCAg -3'
miRNA:   3'- gaACUaa---CCGGgCCCCGA-GACCuGGU- -5'
4024 5' -58.5 NC_001650.1 + 146975 1.08 0.002118
Target:  5'- cCUUGAUUGGCCCGGGGCUCUGGACCAa -3'
miRNA:   3'- -GAACUAACCGGGCCCCGAGACCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 159509 0.68 0.736355
Target:  5'- -cUGAUcacCCCGGGGUUCcugcugUGGACCAg -3'
miRNA:   3'- gaACUAaccGGGCCCCGAG------ACCUGGU- -5'
4024 5' -58.5 NC_001650.1 + 165737 0.7 0.606891
Target:  5'- --cGGggGGCCCGGGGCggCUcuuaggccuagggGGGCCu -3'
miRNA:   3'- gaaCUaaCCGGGCCCCGa-GA-------------CCUGGu -5'
4024 5' -58.5 NC_001650.1 + 171380 0.67 0.790937
Target:  5'- uUUGgg-GGUCCGGGGggucuuaaagaccCUCUaGGACCAc -3'
miRNA:   3'- gAACuaaCCGGGCCCC-------------GAGA-CCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.