Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4024 | 5' | -58.5 | NC_001650.1 | + | 171380 | 0.67 | 0.790937 |
Target: 5'- uUUGgg-GGUCCGGGGggucuuaaagaccCUCUaGGACCAc -3' miRNA: 3'- gAACuaaCCGGGCCCC-------------GAGA-CCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 165737 | 0.7 | 0.606891 |
Target: 5'- --cGGggGGCCCGGGGCggCUcuuaggccuagggGGGCCu -3' miRNA: 3'- gaaCUaaCCGGGCCCCGa-GA-------------CCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 159509 | 0.68 | 0.736355 |
Target: 5'- -cUGAUcacCCCGGGGUUCcugcugUGGACCAg -3' miRNA: 3'- gaACUAaccGGGCCCCGAG------ACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 146975 | 1.08 | 0.002118 |
Target: 5'- cCUUGAUUGGCCCGGGGCUCUGGACCAa -3' miRNA: 3'- -GAACUAACCGGGCCCCGAGACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 145489 | 0.67 | 0.809306 |
Target: 5'- -cUGGgaaagGGCCgGGGGCUcCUGG-UCAg -3' miRNA: 3'- gaACUaa---CCGGgCCCCGA-GACCuGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 141573 | 0.67 | 0.782876 |
Target: 5'- gCUUGcgUGGCCCcGGGCacgugugucgcCUGGugCGg -3' miRNA: 3'- -GAACuaACCGGGcCCCGa----------GACCugGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 138226 | 0.71 | 0.578054 |
Target: 5'- -gUGAUUGGCCCuGcGCUCUcGGCCAa -3' miRNA: 3'- gaACUAACCGGGcCcCGAGAcCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 136222 | 0.71 | 0.578054 |
Target: 5'- aCUUGAgcGGcCCCGGGGCguagucCUGcGCCAu -3' miRNA: 3'- -GAACUaaCC-GGGCCCCGa-----GACcUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 136090 | 0.7 | 0.607889 |
Target: 5'- --aGA-UGGCCgCGGGGgUCaUGGACCc -3' miRNA: 3'- gaaCUaACCGG-GCCCCgAG-ACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 135931 | 0.67 | 0.782876 |
Target: 5'- aCUUGGccaccagcUUGGCCCuGuGGGCUaggGGGCUAg -3' miRNA: 3'- -GAACU--------AACCGGG-C-CCCGAga-CCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 133872 | 0.68 | 0.71708 |
Target: 5'- --aGAagGGgucCCCGGGGCUCgaggaggccgGGGCCGg -3' miRNA: 3'- gaaCUaaCC---GGGCCCCGAGa---------CCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 130028 | 0.73 | 0.463485 |
Target: 5'- -cUGGgcGGCCCGGGaGCUCcaccggcgacUGGACCc -3' miRNA: 3'- gaACUaaCCGGGCCC-CGAG----------ACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 95728 | 0.68 | 0.745866 |
Target: 5'- --gGGuUUGGCCCGGGGCgg-GGaaacuccccgcGCCAg -3' miRNA: 3'- gaaCU-AACCGGGCCCCGagaCC-----------UGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 89170 | 0.71 | 0.538815 |
Target: 5'- --gGGUccUGuGCCCGGGGCUCcgGGGCg- -3' miRNA: 3'- gaaCUA--AC-CGGGCCCCGAGa-CCUGgu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 86724 | 0.66 | 0.817819 |
Target: 5'- ----cUUGGCCUGuGGGCuacUCUGGcgGCCAu -3' miRNA: 3'- gaacuAACCGGGC-CCCG---AGACC--UGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 82445 | 0.72 | 0.500525 |
Target: 5'- -cUGGUaccugGGCUCGGGGUcccugaUCUGGACCc -3' miRNA: 3'- gaACUAa----CCGGGCCCCG------AGACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 80689 | 0.68 | 0.736355 |
Target: 5'- -----gUGGCCgGGGGCUacacGGACCc -3' miRNA: 3'- gaacuaACCGGgCCCCGAga--CCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 78645 | 0.66 | 0.85019 |
Target: 5'- -gUGGUgcuGCCCGaGGCguucCUGGACCGc -3' miRNA: 3'- gaACUAac-CGGGCcCCGa---GACCUGGU- -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 65590 | 0.67 | 0.777443 |
Target: 5'- --aGGgcGGCUCGGGGCggauggagagcgggCUGGACUu -3' miRNA: 3'- gaaCUaaCCGGGCCCCGa-------------GACCUGGu -5' |
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4024 | 5' | -58.5 | NC_001650.1 | + | 63989 | 0.67 | 0.809306 |
Target: 5'- cCUUGGUguuuuacugGGCCgGGGGCUaggguaUGaaGACCAa -3' miRNA: 3'- -GAACUAa--------CCGGgCCCCGAg-----AC--CUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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