miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 3' -58.6 NC_001650.1 + 130692 0.66 0.860694
Target:  5'- cGUGGAGgGGUGgGUCaaaaaaagGGaCGCCuACa -3'
miRNA:   3'- cCACCUCgCCGCgCAGa-------UC-GCGGuUG- -5'
4025 3' -58.6 NC_001650.1 + 121809 0.66 0.853174
Target:  5'- aGGggGGAGCGGCGgGggcaaCgggGGCGCgGGa -3'
miRNA:   3'- -CCa-CCUCGCCGCgCa----Ga--UCGCGgUUg -5'
4025 3' -58.6 NC_001650.1 + 50485 0.66 0.845464
Target:  5'- cGGUGuuGUguuuGGgGUGUCUGGCGCCc-- -3'
miRNA:   3'- -CCACcuCG----CCgCGCAGAUCGCGGuug -5'
4025 3' -58.6 NC_001650.1 + 150975 0.66 0.845464
Target:  5'- gGGUGGcGGUGGCgGCGg-UGGUGgCGGCg -3'
miRNA:   3'- -CCACC-UCGCCG-CGCagAUCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 154474 0.66 0.837572
Target:  5'- uGG-GGcGCGGC-CGcCUggGGCGCUAGCg -3'
miRNA:   3'- -CCaCCuCGCCGcGCaGA--UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 30795 0.66 0.837572
Target:  5'- gGGgacGGGGCGGCGCuG-CgcGUGCUGACc -3'
miRNA:   3'- -CCa--CCUCGCCGCG-CaGauCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 34654 0.66 0.837572
Target:  5'- --gGGGGUGGUGgGUaccAGCGCCuACa -3'
miRNA:   3'- ccaCCUCGCCGCgCAga-UCGCGGuUG- -5'
4025 3' -58.6 NC_001650.1 + 31249 0.66 0.837572
Target:  5'- gGGUGGGGCgaagGGgGCGga-GGCcauuGCCGACg -3'
miRNA:   3'- -CCACCUCG----CCgCGCagaUCG----CGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 25199 0.66 0.837572
Target:  5'- aGUGGGGgGGCGUG-CUgaaaagggGGCGUCAc- -3'
miRNA:   3'- cCACCUCgCCGCGCaGA--------UCGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 28448 0.66 0.829502
Target:  5'- gGGUgGGGGCGGC-CGUgCU-GUGCCuGCc -3'
miRNA:   3'- -CCA-CCUCGCCGcGCA-GAuCGCGGuUG- -5'
4025 3' -58.6 NC_001650.1 + 35587 0.66 0.829502
Target:  5'- --cGGGGUccGGCGCGUgcgAGCGCCu-- -3'
miRNA:   3'- ccaCCUCG--CCGCGCAga-UCGCGGuug -5'
4025 3' -58.6 NC_001650.1 + 115743 0.66 0.817923
Target:  5'- --aGGAGCccuccuucaccguGaGCGUGUCUAcucggacgcggcguGCGCCAGCg -3'
miRNA:   3'- ccaCCUCG-------------C-CGCGCAGAU--------------CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 19532 0.67 0.812863
Target:  5'- uGUGcAGCGGCGCGagUCggggggguugAGCGCCGc- -3'
miRNA:   3'- cCACcUCGCCGCGC--AGa---------UCGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 6087 0.67 0.812863
Target:  5'- gGGUGGgcugGGUGGCGCGcggCgagAGgGCCGu- -3'
miRNA:   3'- -CCACC----UCGCCGCGCa--Ga--UCgCGGUug -5'
4025 3' -58.6 NC_001650.1 + 66753 0.67 0.812863
Target:  5'- cGGUGGGG-GGCGC-UCcgccgcaCGCCAACu -3'
miRNA:   3'- -CCACCUCgCCGCGcAGauc----GCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 172794 0.67 0.812863
Target:  5'- gGGUGGgcugGGUGGCGCGcggCgagAGgGCCGu- -3'
miRNA:   3'- -CCACC----UCGCCGCGCa--Ga--UCgCGGUug -5'
4025 3' -58.6 NC_001650.1 + 111938 0.67 0.804307
Target:  5'- uGGUGu-GCGGCGCGg--GGCGCauccagGACg -3'
miRNA:   3'- -CCACcuCGCCGCGCagaUCGCGg-----UUG- -5'
4025 3' -58.6 NC_001650.1 + 26051 0.67 0.804307
Target:  5'- uGGuUGGccuacAGCGGCG-GcCUgAGCGCCGGCc -3'
miRNA:   3'- -CC-ACC-----UCGCCGCgCaGA-UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 75700 0.67 0.777788
Target:  5'- --aGGAcGgGuGCGcCGUC-AGCGCCAGCg -3'
miRNA:   3'- ccaCCU-CgC-CGC-GCAGaUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 119827 0.67 0.777788
Target:  5'- uGUGGGGCGcG-GCGUCc-GCGcCCAGCc -3'
miRNA:   3'- cCACCUCGC-CgCGCAGauCGC-GGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.