miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 3' -58.6 NC_001650.1 + 35275 0.67 0.774163
Target:  5'- gGGUGG-GCGGgGCGggccggggacgGGCGCgGGCc -3'
miRNA:   3'- -CCACCuCGCCgCGCaga--------UCGCGgUUG- -5'
4025 3' -58.6 NC_001650.1 + 119827 0.67 0.777788
Target:  5'- uGUGGGGCGcG-GCGUCc-GCGcCCAGCc -3'
miRNA:   3'- cCACCUCGC-CgCGCAGauCGC-GGUUG- -5'
4025 3' -58.6 NC_001650.1 + 152484 0.68 0.731238
Target:  5'- uGGUGGGGCauGGCGCccgcGGCGUCGAg -3'
miRNA:   3'- -CCACCUCG--CCGCGcagaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 115290 0.68 0.740744
Target:  5'- aGGgaggGGGGCGGCGUag--AGCGCUggUa -3'
miRNA:   3'- -CCa---CCUCGCCGCGcagaUCGCGGuuG- -5'
4025 3' -58.6 NC_001650.1 + 26640 0.68 0.740744
Target:  5'- --aGGGGCGGCGCGgugCUguaccucuccaAGCuGCCAc- -3'
miRNA:   3'- ccaCCUCGCCGCGCa--GA-----------UCG-CGGUug -5'
4025 3' -58.6 NC_001650.1 + 55638 0.68 0.731238
Target:  5'- cGGcGGGGCGGUgggcccaguccGCGUUggcgaUGGCcGCCAGCu -3'
miRNA:   3'- -CCaCCUCGCCG-----------CGCAG-----AUCG-CGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 137827 0.68 0.711991
Target:  5'- aGG-GGGccgccGCGGCGCaUCUGGUGCCccGCg -3'
miRNA:   3'- -CCaCCU-----CGCCGCGcAGAUCGCGGu-UG- -5'
4025 3' -58.6 NC_001650.1 + 133356 0.68 0.721651
Target:  5'- --cGGGGCGuGCGCu----GCGCCAGCa -3'
miRNA:   3'- ccaCCUCGC-CGCGcagauCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 144648 0.68 0.75016
Target:  5'- cGUGGAGCcugGGCGCaUCUcGCGCgCAcACg -3'
miRNA:   3'- cCACCUCG---CCGCGcAGAuCGCG-GU-UG- -5'
4025 3' -58.6 NC_001650.1 + 36419 0.68 0.721651
Target:  5'- cGGUGGccGGgGaGUGCGUg-GGCGCCAAg -3'
miRNA:   3'- -CCACC--UCgC-CGCGCAgaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 88571 0.68 0.721651
Target:  5'- uGGUGGAGgaCGuGUGCGUCUcGGaCGUgGACa -3'
miRNA:   3'- -CCACCUC--GC-CGCGCAGA-UC-GCGgUUG- -5'
4025 3' -58.6 NC_001650.1 + 166950 0.68 0.721651
Target:  5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3'
miRNA:   3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 243 0.68 0.721651
Target:  5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3'
miRNA:   3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 76193 0.69 0.652976
Target:  5'- aGGUGGAGgccgagugcaGGgGCGUCUcccugggacgcAGCGUCGAUg -3'
miRNA:   3'- -CCACCUCg---------CCgCGCAGA-----------UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 121069 0.69 0.672795
Target:  5'- cGG-GGAcgccGCGGCGCGgggGGCGCCc-- -3'
miRNA:   3'- -CCaCCU----CGCCGCGCagaUCGCGGuug -5'
4025 3' -58.6 NC_001650.1 + 96812 0.69 0.680691
Target:  5'- uGGUGGAcugcuucGCGGC-CGUCUAcuacuuucugggcGCGCUGGCc -3'
miRNA:   3'- -CCACCU-------CGCCGcGCAGAU-------------CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 145785 0.69 0.652976
Target:  5'- cGGUugcGGAGCGGCgGCGcCacAGCGgCGACa -3'
miRNA:   3'- -CCA---CCUCGCCG-CGCaGa-UCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 31458 0.7 0.603284
Target:  5'- uGUGGGGCaGCGC-UCUGuacGCGUCGGCg -3'
miRNA:   3'- cCACCUCGcCGCGcAGAU---CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 37585 0.71 0.544375
Target:  5'- cGGUGcGGGCGGCggccgaGCGcCUGuGCGCCAu- -3'
miRNA:   3'- -CCAC-CUCGCCG------CGCaGAU-CGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 35789 0.71 0.544375
Target:  5'- gGGUGGuacucgugcgcGGCGGC-CGUCccGCGCCAGg -3'
miRNA:   3'- -CCACC-----------UCGCCGcGCAGauCGCGGUUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.