miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 3' -58.6 NC_001650.1 + 148045 1.12 0.001261
Target:  5'- cGGUGGAGCGGCGCGUCUAGCGCCAACg -3'
miRNA:   3'- -CCACCUCGCCGCGCAGAUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 48594 0.79 0.197954
Target:  5'- cGGUGGGGaCGGCGCG---GGCGCCAGg -3'
miRNA:   3'- -CCACCUC-GCCGCGCagaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 120518 0.76 0.315329
Target:  5'- cGG-GGAGCaGGUGCcUCUgGGCGCCGGCg -3'
miRNA:   3'- -CCaCCUCG-CCGCGcAGA-UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 19336 0.75 0.336897
Target:  5'- gGGUGGcGGCGGCGCGcUCUAGUcaggGCCu-- -3'
miRNA:   3'- -CCACC-UCGCCGCGC-AGAUCG----CGGuug -5'
4025 3' -58.6 NC_001650.1 + 125952 0.73 0.460059
Target:  5'- --gGGGGUGGCGgaaGUCaaAGCGCCGACg -3'
miRNA:   3'- ccaCCUCGCCGCg--CAGa-UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 81642 0.73 0.469103
Target:  5'- -cUGGGGCGaGgGCGUCU-GCGCCuGCu -3'
miRNA:   3'- ccACCUCGC-CgCGCAGAuCGCGGuUG- -5'
4025 3' -58.6 NC_001650.1 + 20680 0.73 0.469103
Target:  5'- cGGgGGGGaCGGgGgGUCUGGUGCCGGg -3'
miRNA:   3'- -CCaCCUC-GCCgCgCAGAUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 163262 0.73 0.442256
Target:  5'- gGGUGGAGCGGgGCGa--GGCGgUAGCc -3'
miRNA:   3'- -CCACCUCGCCgCGCagaUCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 35789 0.71 0.544375
Target:  5'- gGGUGGuacucgugcgcGGCGGC-CGUCccGCGCCAGg -3'
miRNA:   3'- -CCACC-----------UCGCCGcGCAGauCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 37585 0.71 0.544375
Target:  5'- cGGUGcGGGCGGCggccgaGCGcCUGuGCGCCAu- -3'
miRNA:   3'- -CCAC-CUCGCCG------CGCaGAU-CGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 31458 0.7 0.603284
Target:  5'- uGUGGGGCaGCGC-UCUGuacGCGUCGGCg -3'
miRNA:   3'- cCACCUCGcCGCGcAGAU---CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 121069 0.69 0.672795
Target:  5'- cGG-GGAcgccGCGGCGCGgggGGCGCCc-- -3'
miRNA:   3'- -CCaCCU----CGCCGCGCagaUCGCGGuug -5'
4025 3' -58.6 NC_001650.1 + 76193 0.69 0.652976
Target:  5'- aGGUGGAGgccgagugcaGGgGCGUCUcccugggacgcAGCGUCGAUg -3'
miRNA:   3'- -CCACCUCg---------CCgCGCAGA-----------UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 96812 0.69 0.680691
Target:  5'- uGGUGGAcugcuucGCGGC-CGUCUAcuacuuucugggcGCGCUGGCc -3'
miRNA:   3'- -CCACCU-------CGCCGcGCAGAU-------------CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 145785 0.69 0.652976
Target:  5'- cGGUugcGGAGCGGCgGCGcCacAGCGgCGACa -3'
miRNA:   3'- -CCA---CCUCGCCG-CGCaGa-UCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 88571 0.68 0.721651
Target:  5'- uGGUGGAGgaCGuGUGCGUCUcGGaCGUgGACa -3'
miRNA:   3'- -CCACCUC--GC-CGCGCAGA-UC-GCGgUUG- -5'
4025 3' -58.6 NC_001650.1 + 137827 0.68 0.711991
Target:  5'- aGG-GGGccgccGCGGCGCaUCUGGUGCCccGCg -3'
miRNA:   3'- -CCaCCU-----CGCCGCGcAGAUCGCGGu-UG- -5'
4025 3' -58.6 NC_001650.1 + 166950 0.68 0.721651
Target:  5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3'
miRNA:   3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 36419 0.68 0.721651
Target:  5'- cGGUGGccGGgGaGUGCGUg-GGCGCCAAg -3'
miRNA:   3'- -CCACC--UCgC-CGCGCAgaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 243 0.68 0.721651
Target:  5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3'
miRNA:   3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.