Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4025 | 3' | -58.6 | NC_001650.1 | + | 148045 | 1.12 | 0.001261 |
Target: 5'- cGGUGGAGCGGCGCGUCUAGCGCCAACg -3' miRNA: 3'- -CCACCUCGCCGCGCAGAUCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 48594 | 0.79 | 0.197954 |
Target: 5'- cGGUGGGGaCGGCGCG---GGCGCCAGg -3' miRNA: 3'- -CCACCUC-GCCGCGCagaUCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 120518 | 0.76 | 0.315329 |
Target: 5'- cGG-GGAGCaGGUGCcUCUgGGCGCCGGCg -3' miRNA: 3'- -CCaCCUCG-CCGCGcAGA-UCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 19336 | 0.75 | 0.336897 |
Target: 5'- gGGUGGcGGCGGCGCGcUCUAGUcaggGCCu-- -3' miRNA: 3'- -CCACC-UCGCCGCGC-AGAUCG----CGGuug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 163262 | 0.73 | 0.442256 |
Target: 5'- gGGUGGAGCGGgGCGa--GGCGgUAGCc -3' miRNA: 3'- -CCACCUCGCCgCGCagaUCGCgGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 125952 | 0.73 | 0.460059 |
Target: 5'- --gGGGGUGGCGgaaGUCaaAGCGCCGACg -3' miRNA: 3'- ccaCCUCGCCGCg--CAGa-UCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 81642 | 0.73 | 0.469103 |
Target: 5'- -cUGGGGCGaGgGCGUCU-GCGCCuGCu -3' miRNA: 3'- ccACCUCGC-CgCGCAGAuCGCGGuUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 20680 | 0.73 | 0.469103 |
Target: 5'- cGGgGGGGaCGGgGgGUCUGGUGCCGGg -3' miRNA: 3'- -CCaCCUC-GCCgCgCAGAUCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 35789 | 0.71 | 0.544375 |
Target: 5'- gGGUGGuacucgugcgcGGCGGC-CGUCccGCGCCAGg -3' miRNA: 3'- -CCACC-----------UCGCCGcGCAGauCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 37585 | 0.71 | 0.544375 |
Target: 5'- cGGUGcGGGCGGCggccgaGCGcCUGuGCGCCAu- -3' miRNA: 3'- -CCAC-CUCGCCG------CGCaGAU-CGCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 31458 | 0.7 | 0.603284 |
Target: 5'- uGUGGGGCaGCGC-UCUGuacGCGUCGGCg -3' miRNA: 3'- cCACCUCGcCGCGcAGAU---CGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 145785 | 0.69 | 0.652976 |
Target: 5'- cGGUugcGGAGCGGCgGCGcCacAGCGgCGACa -3' miRNA: 3'- -CCA---CCUCGCCG-CGCaGa-UCGCgGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 76193 | 0.69 | 0.652976 |
Target: 5'- aGGUGGAGgccgagugcaGGgGCGUCUcccugggacgcAGCGUCGAUg -3' miRNA: 3'- -CCACCUCg---------CCgCGCAGA-----------UCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 121069 | 0.69 | 0.672795 |
Target: 5'- cGG-GGAcgccGCGGCGCGgggGGCGCCc-- -3' miRNA: 3'- -CCaCCU----CGCCGCGCagaUCGCGGuug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 96812 | 0.69 | 0.680691 |
Target: 5'- uGGUGGAcugcuucGCGGC-CGUCUAcuacuuucugggcGCGCUGGCc -3' miRNA: 3'- -CCACCU-------CGCCGcGCAGAU-------------CGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 137827 | 0.68 | 0.711991 |
Target: 5'- aGG-GGGccgccGCGGCGCaUCUGGUGCCccGCg -3' miRNA: 3'- -CCaCCU-----CGCCGCGcAGAUCGCGGu-UG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 166950 | 0.68 | 0.721651 |
Target: 5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3' miRNA: 3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 36419 | 0.68 | 0.721651 |
Target: 5'- cGGUGGccGGgGaGUGCGUg-GGCGCCAAg -3' miRNA: 3'- -CCACC--UCgC-CGCGCAgaUCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 243 | 0.68 | 0.721651 |
Target: 5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3' miRNA: 3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 88571 | 0.68 | 0.721651 |
Target: 5'- uGGUGGAGgaCGuGUGCGUCUcGGaCGUgGACa -3' miRNA: 3'- -CCACCUC--GC-CGCGCAGA-UC-GCGgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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