Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4025 | 3' | -58.6 | NC_001650.1 | + | 166950 | 0.68 | 0.721651 |
Target: 5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3' miRNA: 3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 152484 | 0.68 | 0.731238 |
Target: 5'- uGGUGGGGCauGGCGCccgcGGCGUCGAg -3' miRNA: 3'- -CCACCUCG--CCGCGcagaUCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 55638 | 0.68 | 0.731238 |
Target: 5'- cGGcGGGGCGGUgggcccaguccGCGUUggcgaUGGCcGCCAGCu -3' miRNA: 3'- -CCaCCUCGCCG-----------CGCAG-----AUCG-CGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 26640 | 0.68 | 0.740744 |
Target: 5'- --aGGGGCGGCGCGgugCUguaccucuccaAGCuGCCAc- -3' miRNA: 3'- ccaCCUCGCCGCGCa--GA-----------UCG-CGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 115290 | 0.68 | 0.740744 |
Target: 5'- aGGgaggGGGGCGGCGUag--AGCGCUggUa -3' miRNA: 3'- -CCa---CCUCGCCGCGcagaUCGCGGuuG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 144648 | 0.68 | 0.75016 |
Target: 5'- cGUGGAGCcugGGCGCaUCUcGCGCgCAcACg -3' miRNA: 3'- cCACCUCG---CCGCGcAGAuCGCG-GU-UG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 35275 | 0.67 | 0.774163 |
Target: 5'- gGGUGG-GCGGgGCGggccggggacgGGCGCgGGCc -3' miRNA: 3'- -CCACCuCGCCgCGCaga--------UCGCGgUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 75700 | 0.67 | 0.777788 |
Target: 5'- --aGGAcGgGuGCGcCGUC-AGCGCCAGCg -3' miRNA: 3'- ccaCCU-CgC-CGC-GCAGaUCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 21173 | 0.67 | 0.777788 |
Target: 5'- aGGcGG-GCGGCGCGgguugcgaccgUCU-GCGCCAc- -3' miRNA: 3'- -CCaCCuCGCCGCGC-----------AGAuCGCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 119827 | 0.67 | 0.777788 |
Target: 5'- uGUGGGGCGcG-GCGUCc-GCGcCCAGCc -3' miRNA: 3'- cCACCUCGC-CgCGCAGauCGC-GGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 26051 | 0.67 | 0.804307 |
Target: 5'- uGGuUGGccuacAGCGGCG-GcCUgAGCGCCGGCc -3' miRNA: 3'- -CC-ACC-----UCGCCGCgCaGA-UCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 111938 | 0.67 | 0.804307 |
Target: 5'- uGGUGu-GCGGCGCGg--GGCGCauccagGACg -3' miRNA: 3'- -CCACcuCGCCGCGCagaUCGCGg-----UUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 6087 | 0.67 | 0.812863 |
Target: 5'- gGGUGGgcugGGUGGCGCGcggCgagAGgGCCGu- -3' miRNA: 3'- -CCACC----UCGCCGCGCa--Ga--UCgCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 19532 | 0.67 | 0.812863 |
Target: 5'- uGUGcAGCGGCGCGagUCggggggguugAGCGCCGc- -3' miRNA: 3'- cCACcUCGCCGCGC--AGa---------UCGCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 172794 | 0.67 | 0.812863 |
Target: 5'- gGGUGGgcugGGUGGCGCGcggCgagAGgGCCGu- -3' miRNA: 3'- -CCACC----UCGCCGCGCa--Ga--UCgCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 66753 | 0.67 | 0.812863 |
Target: 5'- cGGUGGGG-GGCGC-UCcgccgcaCGCCAACu -3' miRNA: 3'- -CCACCUCgCCGCGcAGauc----GCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 115743 | 0.66 | 0.817923 |
Target: 5'- --aGGAGCccuccuucaccguGaGCGUGUCUAcucggacgcggcguGCGCCAGCg -3' miRNA: 3'- ccaCCUCG-------------C-CGCGCAGAU--------------CGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 35587 | 0.66 | 0.829502 |
Target: 5'- --cGGGGUccGGCGCGUgcgAGCGCCu-- -3' miRNA: 3'- ccaCCUCG--CCGCGCAga-UCGCGGuug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 28448 | 0.66 | 0.829502 |
Target: 5'- gGGUgGGGGCGGC-CGUgCU-GUGCCuGCc -3' miRNA: 3'- -CCA-CCUCGCCGcGCA-GAuCGCGGuUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 34654 | 0.66 | 0.837572 |
Target: 5'- --gGGGGUGGUGgGUaccAGCGCCuACa -3' miRNA: 3'- ccaCCUCGCCGCgCAga-UCGCGGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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