miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 3' -58.6 NC_001650.1 + 150975 0.66 0.845464
Target:  5'- gGGUGGcGGUGGCgGCGg-UGGUGgCGGCg -3'
miRNA:   3'- -CCACC-UCGCCG-CGCagAUCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 35275 0.67 0.774163
Target:  5'- gGGUGG-GCGGgGCGggccggggacgGGCGCgGGCc -3'
miRNA:   3'- -CCACCuCGCCgCGCaga--------UCGCGgUUG- -5'
4025 3' -58.6 NC_001650.1 + 119827 0.67 0.777788
Target:  5'- uGUGGGGCGcG-GCGUCc-GCGcCCAGCc -3'
miRNA:   3'- cCACCUCGC-CgCGCAGauCGC-GGUUG- -5'
4025 3' -58.6 NC_001650.1 + 75700 0.67 0.777788
Target:  5'- --aGGAcGgGuGCGcCGUC-AGCGCCAGCg -3'
miRNA:   3'- ccaCCU-CgC-CGC-GCAGaUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 26051 0.67 0.804307
Target:  5'- uGGuUGGccuacAGCGGCG-GcCUgAGCGCCGGCc -3'
miRNA:   3'- -CC-ACC-----UCGCCGCgCaGA-UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 111938 0.67 0.804307
Target:  5'- uGGUGu-GCGGCGCGg--GGCGCauccagGACg -3'
miRNA:   3'- -CCACcuCGCCGCGCagaUCGCGg-----UUG- -5'
4025 3' -58.6 NC_001650.1 + 31249 0.66 0.837572
Target:  5'- gGGUGGGGCgaagGGgGCGga-GGCcauuGCCGACg -3'
miRNA:   3'- -CCACCUCG----CCgCGCagaUCG----CGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 34654 0.66 0.837572
Target:  5'- --gGGGGUGGUGgGUaccAGCGCCuACa -3'
miRNA:   3'- ccaCCUCGCCGCgCAga-UCGCGGuUG- -5'
4025 3' -58.6 NC_001650.1 + 30795 0.66 0.837572
Target:  5'- gGGgacGGGGCGGCGCuG-CgcGUGCUGACc -3'
miRNA:   3'- -CCa--CCUCGCCGCG-CaGauCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 166950 0.68 0.721651
Target:  5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3'
miRNA:   3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 88571 0.68 0.721651
Target:  5'- uGGUGGAGgaCGuGUGCGUCUcGGaCGUgGACa -3'
miRNA:   3'- -CCACCUC--GC-CGCGCAGA-UC-GCGgUUG- -5'
4025 3' -58.6 NC_001650.1 + 36419 0.68 0.721651
Target:  5'- cGGUGGccGGgGaGUGCGUg-GGCGCCAAg -3'
miRNA:   3'- -CCACC--UCgC-CGCGCAgaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 120518 0.76 0.315329
Target:  5'- cGG-GGAGCaGGUGCcUCUgGGCGCCGGCg -3'
miRNA:   3'- -CCaCCUCG-CCGCGcAGA-UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 163262 0.73 0.442256
Target:  5'- gGGUGGAGCGGgGCGa--GGCGgUAGCc -3'
miRNA:   3'- -CCACCUCGCCgCGCagaUCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 35789 0.71 0.544375
Target:  5'- gGGUGGuacucgugcgcGGCGGC-CGUCccGCGCCAGg -3'
miRNA:   3'- -CCACC-----------UCGCCGcGCAGauCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 37585 0.71 0.544375
Target:  5'- cGGUGcGGGCGGCggccgaGCGcCUGuGCGCCAu- -3'
miRNA:   3'- -CCAC-CUCGCCG------CGCaGAU-CGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 31458 0.7 0.603284
Target:  5'- uGUGGGGCaGCGC-UCUGuacGCGUCGGCg -3'
miRNA:   3'- cCACCUCGcCGCGcAGAU---CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 76193 0.69 0.652976
Target:  5'- aGGUGGAGgccgagugcaGGgGCGUCUcccugggacgcAGCGUCGAUg -3'
miRNA:   3'- -CCACCUCg---------CCgCGCAGA-----------UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 121069 0.69 0.672795
Target:  5'- cGG-GGAcgccGCGGCGCGgggGGCGCCc-- -3'
miRNA:   3'- -CCaCCU----CGCCGCGCagaUCGCGGuug -5'
4025 3' -58.6 NC_001650.1 + 243 0.68 0.721651
Target:  5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3'
miRNA:   3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.