Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4025 | 3' | -58.6 | NC_001650.1 | + | 81642 | 0.73 | 0.469103 |
Target: 5'- -cUGGGGCGaGgGCGUCU-GCGCCuGCu -3' miRNA: 3'- ccACCUCGC-CgCGCAGAuCGCGGuUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 145785 | 0.69 | 0.652976 |
Target: 5'- cGGUugcGGAGCGGCgGCGcCacAGCGgCGACa -3' miRNA: 3'- -CCA---CCUCGCCG-CGCaGa-UCGCgGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 96812 | 0.69 | 0.680691 |
Target: 5'- uGGUGGAcugcuucGCGGC-CGUCUAcuacuuucugggcGCGCUGGCc -3' miRNA: 3'- -CCACCU-------CGCCGcGCAGAU-------------CGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 137827 | 0.68 | 0.711991 |
Target: 5'- aGG-GGGccgccGCGGCGCaUCUGGUGCCccGCg -3' miRNA: 3'- -CCaCCU-----CGCCGCGcAGAUCGCGGu-UG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 133356 | 0.68 | 0.721651 |
Target: 5'- --cGGGGCGuGCGCu----GCGCCAGCa -3' miRNA: 3'- ccaCCUCGC-CGCGcagauCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 152484 | 0.68 | 0.731238 |
Target: 5'- uGGUGGGGCauGGCGCccgcGGCGUCGAg -3' miRNA: 3'- -CCACCUCG--CCGCGcagaUCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 55638 | 0.68 | 0.731238 |
Target: 5'- cGGcGGGGCGGUgggcccaguccGCGUUggcgaUGGCcGCCAGCu -3' miRNA: 3'- -CCaCCUCGCCG-----------CGCAG-----AUCG-CGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 48594 | 0.79 | 0.197954 |
Target: 5'- cGGUGGGGaCGGCGCG---GGCGCCAGg -3' miRNA: 3'- -CCACCUC-GCCGCGCagaUCGCGGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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