miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 3' -58.6 NC_001650.1 + 48594 0.79 0.197954
Target:  5'- cGGUGGGGaCGGCGCG---GGCGCCAGg -3'
miRNA:   3'- -CCACCUC-GCCGCGCagaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 66753 0.67 0.812863
Target:  5'- cGGUGGGG-GGCGC-UCcgccgcaCGCCAACu -3'
miRNA:   3'- -CCACCUCgCCGCGcAGauc----GCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 115743 0.66 0.817923
Target:  5'- --aGGAGCccuccuucaccguGaGCGUGUCUAcucggacgcggcguGCGCCAGCg -3'
miRNA:   3'- ccaCCUCG-------------C-CGCGCAGAU--------------CGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 50485 0.66 0.845464
Target:  5'- cGGUGuuGUguuuGGgGUGUCUGGCGCCc-- -3'
miRNA:   3'- -CCACcuCG----CCgCGCAGAUCGCGGuug -5'
4025 3' -58.6 NC_001650.1 + 81642 0.73 0.469103
Target:  5'- -cUGGGGCGaGgGCGUCU-GCGCCuGCu -3'
miRNA:   3'- ccACCUCGC-CgCGCAGAuCGCGGuUG- -5'
4025 3' -58.6 NC_001650.1 + 145785 0.69 0.652976
Target:  5'- cGGUugcGGAGCGGCgGCGcCacAGCGgCGACa -3'
miRNA:   3'- -CCA---CCUCGCCG-CGCaGa-UCGCgGUUG- -5'
4025 3' -58.6 NC_001650.1 + 137827 0.68 0.711991
Target:  5'- aGG-GGGccgccGCGGCGCaUCUGGUGCCccGCg -3'
miRNA:   3'- -CCaCCU-----CGCCGCGcAGAUCGCGGu-UG- -5'
4025 3' -58.6 NC_001650.1 + 133356 0.68 0.721651
Target:  5'- --cGGGGCGuGCGCu----GCGCCAGCa -3'
miRNA:   3'- ccaCCUCGC-CGCGcagauCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 26640 0.68 0.740744
Target:  5'- --aGGGGCGGCGCGgugCUguaccucuccaAGCuGCCAc- -3'
miRNA:   3'- ccaCCUCGCCGCGCa--GA-----------UCG-CGGUug -5'
4025 3' -58.6 NC_001650.1 + 19532 0.67 0.812863
Target:  5'- uGUGcAGCGGCGCGagUCggggggguugAGCGCCGc- -3'
miRNA:   3'- cCACcUCGCCGCGC--AGa---------UCGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 144648 0.68 0.75016
Target:  5'- cGUGGAGCcugGGCGCaUCUcGCGCgCAcACg -3'
miRNA:   3'- cCACCUCG---CCGCGcAGAuCGCG-GU-UG- -5'
4025 3' -58.6 NC_001650.1 + 55638 0.68 0.731238
Target:  5'- cGGcGGGGCGGUgggcccaguccGCGUUggcgaUGGCcGCCAGCu -3'
miRNA:   3'- -CCaCCUCGCCG-----------CGCAG-----AUCG-CGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 19336 0.75 0.336897
Target:  5'- gGGUGGcGGCGGCGCGcUCUAGUcaggGCCu-- -3'
miRNA:   3'- -CCACC-UCGCCGCGC-AGAUCG----CGGuug -5'
4025 3' -58.6 NC_001650.1 + 21173 0.67 0.777788
Target:  5'- aGGcGG-GCGGCGCGgguugcgaccgUCU-GCGCCAc- -3'
miRNA:   3'- -CCaCCuCGCCGCGC-----------AGAuCGCGGUug -5'
4025 3' -58.6 NC_001650.1 + 125952 0.73 0.460059
Target:  5'- --gGGGGUGGCGgaaGUCaaAGCGCCGACg -3'
miRNA:   3'- ccaCCUCGCCGCg--CAGa-UCGCGGUUG- -5'
4025 3' -58.6 NC_001650.1 + 152484 0.68 0.731238
Target:  5'- uGGUGGGGCauGGCGCccgcGGCGUCGAg -3'
miRNA:   3'- -CCACCUCG--CCGCGcagaUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 6087 0.67 0.812863
Target:  5'- gGGUGGgcugGGUGGCGCGcggCgagAGgGCCGu- -3'
miRNA:   3'- -CCACC----UCGCCGCGCa--Ga--UCgCGGUug -5'
4025 3' -58.6 NC_001650.1 + 172794 0.67 0.812863
Target:  5'- gGGUGGgcugGGUGGCGCGcggCgagAGgGCCGu- -3'
miRNA:   3'- -CCACC----UCGCCGCGCa--Ga--UCgCGGUug -5'
4025 3' -58.6 NC_001650.1 + 20680 0.73 0.469103
Target:  5'- cGGgGGGGaCGGgGgGUCUGGUGCCGGg -3'
miRNA:   3'- -CCaCCUC-GCCgCgCAGAUCGCGGUUg -5'
4025 3' -58.6 NC_001650.1 + 96812 0.69 0.680691
Target:  5'- uGGUGGAcugcuucGCGGC-CGUCUAcuacuuucugggcGCGCUGGCc -3'
miRNA:   3'- -CCACCU-------CGCCGcGCAGAU-------------CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.