Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4025 | 3' | -58.6 | NC_001650.1 | + | 115290 | 0.68 | 0.740744 |
Target: 5'- aGGgaggGGGGCGGCGUag--AGCGCUggUa -3' miRNA: 3'- -CCa---CCUCGCCGCGcagaUCGCGGuuG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 25199 | 0.66 | 0.837572 |
Target: 5'- aGUGGGGgGGCGUG-CUgaaaagggGGCGUCAc- -3' miRNA: 3'- cCACCUCgCCGCGCaGA--------UCGCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 28448 | 0.66 | 0.829502 |
Target: 5'- gGGUgGGGGCGGC-CGUgCU-GUGCCuGCc -3' miRNA: 3'- -CCA-CCUCGCCGcGCA-GAuCGCGGuUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 154474 | 0.66 | 0.837572 |
Target: 5'- uGG-GGcGCGGC-CGcCUggGGCGCUAGCg -3' miRNA: 3'- -CCaCCuCGCCGcGCaGA--UCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 115743 | 0.66 | 0.817923 |
Target: 5'- --aGGAGCccuccuucaccguGaGCGUGUCUAcucggacgcggcguGCGCCAGCg -3' miRNA: 3'- ccaCCUCG-------------C-CGCGCAGAU--------------CGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 37585 | 0.71 | 0.544375 |
Target: 5'- cGGUGcGGGCGGCggccgaGCGcCUGuGCGCCAu- -3' miRNA: 3'- -CCAC-CUCGCCG------CGCaGAU-CGCGGUug -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 31458 | 0.7 | 0.603284 |
Target: 5'- uGUGGGGCaGCGC-UCUGuacGCGUCGGCg -3' miRNA: 3'- cCACCUCGcCGCGcAGAU---CGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 76193 | 0.69 | 0.652976 |
Target: 5'- aGGUGGAGgccgagugcaGGgGCGUCUcccugggacgcAGCGUCGAUg -3' miRNA: 3'- -CCACCUCg---------CCgCGCAGA-----------UCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 163262 | 0.73 | 0.442256 |
Target: 5'- gGGUGGAGCGGgGCGa--GGCGgUAGCc -3' miRNA: 3'- -CCACCUCGCCgCGCagaUCGCgGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 36419 | 0.68 | 0.721651 |
Target: 5'- cGGUGGccGGgGaGUGCGUg-GGCGCCAAg -3' miRNA: 3'- -CCACC--UCgC-CGCGCAgaUCGCGGUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 88571 | 0.68 | 0.721651 |
Target: 5'- uGGUGGAGgaCGuGUGCGUCUcGGaCGUgGACa -3' miRNA: 3'- -CCACCUC--GC-CGCGCAGA-UC-GCGgUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 34654 | 0.66 | 0.837572 |
Target: 5'- --gGGGGUGGUGgGUaccAGCGCCuACa -3' miRNA: 3'- ccaCCUCGCCGCgCAga-UCGCGGuUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 30795 | 0.66 | 0.837572 |
Target: 5'- gGGgacGGGGCGGCGCuG-CgcGUGCUGACc -3' miRNA: 3'- -CCa--CCUCGCCGCG-CaGauCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 121809 | 0.66 | 0.853174 |
Target: 5'- aGGggGGAGCGGCGgGggcaaCgggGGCGCgGGa -3' miRNA: 3'- -CCa-CCUCGCCGCgCa----Ga--UCGCGgUUg -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 130692 | 0.66 | 0.860694 |
Target: 5'- cGUGGAGgGGUGgGUCaaaaaaagGGaCGCCuACa -3' miRNA: 3'- cCACCUCgCCGCgCAGa-------UC-GCGGuUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 75700 | 0.67 | 0.777788 |
Target: 5'- --aGGAcGgGuGCGcCGUC-AGCGCCAGCg -3' miRNA: 3'- ccaCCU-CgC-CGC-GCAGaUCGCGGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 150975 | 0.66 | 0.845464 |
Target: 5'- gGGUGGcGGUGGCgGCGg-UGGUGgCGGCg -3' miRNA: 3'- -CCACC-UCGCCG-CGCagAUCGCgGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 119827 | 0.67 | 0.777788 |
Target: 5'- uGUGGGGCGcG-GCGUCc-GCGcCCAGCc -3' miRNA: 3'- cCACCUCGC-CgCGCAGauCGC-GGUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 35275 | 0.67 | 0.774163 |
Target: 5'- gGGUGG-GCGGgGCGggccggggacgGGCGCgGGCc -3' miRNA: 3'- -CCACCuCGCCgCGCaga--------UCGCGgUUG- -5' |
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4025 | 3' | -58.6 | NC_001650.1 | + | 166950 | 0.68 | 0.721651 |
Target: 5'- cGGUGG-GCGGaGCuUC-AGCGUCAACc -3' miRNA: 3'- -CCACCuCGCCgCGcAGaUCGCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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