miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 5' -51.6 NC_001650.1 + 52773 0.66 0.992159
Target:  5'- gCGGUAGGCGuCCAGG-ACGCccuGCACGu -3'
miRNA:   3'- -GUCAUUCGU-GGUUCgUGCGag-UGUGU- -5'
4025 5' -51.6 NC_001650.1 + 28195 0.66 0.991005
Target:  5'- aCGGUgGAGC-CCAggacgggcgaggGGCACGUgguggUCACGCAg -3'
miRNA:   3'- -GUCA-UUCGuGGU------------UCGUGCG-----AGUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 69789 0.66 0.991005
Target:  5'- cCAG--GGCGuCCAGGUugGCggUCACACc -3'
miRNA:   3'- -GUCauUCGU-GGUUCGugCG--AGUGUGu -5'
4025 5' -51.6 NC_001650.1 + 36236 0.66 0.989721
Target:  5'- gGGcGGGCgACCGAGCGCagguGCgUCGCGCGu -3'
miRNA:   3'- gUCaUUCG-UGGUUCGUG----CG-AGUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 82510 0.66 0.989721
Target:  5'- gAGUGccuGUACCGcGCGCGCUUcggGCACc -3'
miRNA:   3'- gUCAUu--CGUGGUuCGUGCGAG---UGUGu -5'
4025 5' -51.6 NC_001650.1 + 144634 0.66 0.989721
Target:  5'- cCGGUGGGcCACCGcguggagccugGGCGCauCUCGCGCGc -3'
miRNA:   3'- -GUCAUUC-GUGGU-----------UCGUGc-GAGUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 41158 0.66 0.988297
Target:  5'- gCAGgcgGAGCGCCucGGCGCcCUC-CGCGu -3'
miRNA:   3'- -GUCa--UUCGUGGu-UCGUGcGAGuGUGU- -5'
4025 5' -51.6 NC_001650.1 + 161790 0.66 0.986725
Target:  5'- gGGUGGGCGcgcCCGAGCAC-CUCugGg- -3'
miRNA:   3'- gUCAUUCGU---GGUUCGUGcGAGugUgu -5'
4025 5' -51.6 NC_001650.1 + 116776 0.67 0.9831
Target:  5'- -----cGCACUGAGCAUGCUCugGa- -3'
miRNA:   3'- gucauuCGUGGUUCGUGCGAGugUgu -5'
4025 5' -51.6 NC_001650.1 + 48844 0.67 0.9831
Target:  5'- gCGGUGGGUGCC-AGCAacUGCUC-CAUAg -3'
miRNA:   3'- -GUCAUUCGUGGuUCGU--GCGAGuGUGU- -5'
4025 5' -51.6 NC_001650.1 + 64034 0.67 0.9831
Target:  5'- aGGUGAcGC-CCAGGgGCGaCUCugGCGa -3'
miRNA:   3'- gUCAUU-CGuGGUUCgUGC-GAGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 131396 0.67 0.981029
Target:  5'- gCGGgcaGGGCGCCGAGaACGC-CGCGCc -3'
miRNA:   3'- -GUCa--UUCGUGGUUCgUGCGaGUGUGu -5'
4025 5' -51.6 NC_001650.1 + 50750 0.67 0.981029
Target:  5'- gCGGUGGGCGCCGccacCACcuGCUCGCAgGa -3'
miRNA:   3'- -GUCAUUCGUGGUuc--GUG--CGAGUGUgU- -5'
4025 5' -51.6 NC_001650.1 + 115371 0.67 0.978773
Target:  5'- --aUGGGC-CCGGGCGCGCg-GCACGu -3'
miRNA:   3'- gucAUUCGuGGUUCGUGCGagUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 28475 0.67 0.978773
Target:  5'- cCGGcu-GCACCGAGCcccuggccGCGCUgCACGCc -3'
miRNA:   3'- -GUCauuCGUGGUUCG--------UGCGA-GUGUGu -5'
4025 5' -51.6 NC_001650.1 + 65394 0.67 0.978773
Target:  5'- gAGUacGAGCGCCugaucucgcgGGGCAUGCUCucggccaaGCGCAu -3'
miRNA:   3'- gUCA--UUCGUGG----------UUCGUGCGAG--------UGUGU- -5'
4025 5' -51.6 NC_001650.1 + 173454 0.67 0.976325
Target:  5'- gCAGUGAGCACCcccuAGUcUGC-CugGCAa -3'
miRNA:   3'- -GUCAUUCGUGGu---UCGuGCGaGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 6747 0.67 0.976325
Target:  5'- gCAGUGAGCACCcccuAGUcUGC-CugGCAa -3'
miRNA:   3'- -GUCAUUCGUGGu---UCGuGCGaGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 65462 0.68 0.973676
Target:  5'- --aUAAGCACCGugacgAGCAUGCucUCugACAa -3'
miRNA:   3'- gucAUUCGUGGU-----UCGUGCG--AGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 108686 0.68 0.973676
Target:  5'- gGGUugAGGUACCAGGC-CaGCaUCGCGCAc -3'
miRNA:   3'- gUCA--UUCGUGGUUCGuG-CG-AGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.