miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4025 5' -51.6 NC_001650.1 + 148079 1.09 0.008178
Target:  5'- cCAGUAAGCACCAAGCACGCUCACACAc -3'
miRNA:   3'- -GUCAUUCGUGGUUCGUGCGAGUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 135332 0.68 0.970819
Target:  5'- aGGgcAGCACCAGGUccaGCUCGguCGCGg -3'
miRNA:   3'- gUCauUCGUGGUUCGug-CGAGU--GUGU- -5'
4025 5' -51.6 NC_001650.1 + 65462 0.68 0.973676
Target:  5'- --aUAAGCACCGugacgAGCAUGCucUCugACAa -3'
miRNA:   3'- gucAUUCGUGGU-----UCGUGCG--AGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 6747 0.67 0.976325
Target:  5'- gCAGUGAGCACCcccuAGUcUGC-CugGCAa -3'
miRNA:   3'- -GUCAUUCGUGGu---UCGuGCGaGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 173454 0.67 0.976325
Target:  5'- gCAGUGAGCACCcccuAGUcUGC-CugGCAa -3'
miRNA:   3'- -GUCAUUCGUGGu---UCGuGCGaGugUGU- -5'
4025 5' -51.6 NC_001650.1 + 50750 0.67 0.981029
Target:  5'- gCGGUGGGCGCCGccacCACcuGCUCGCAgGa -3'
miRNA:   3'- -GUCAUUCGUGGUuc--GUG--CGAGUGUgU- -5'
4025 5' -51.6 NC_001650.1 + 116776 0.67 0.9831
Target:  5'- -----cGCACUGAGCAUGCUCugGa- -3'
miRNA:   3'- gucauuCGUGGUUCGUGCGAGugUgu -5'
4025 5' -51.6 NC_001650.1 + 82510 0.66 0.989721
Target:  5'- gAGUGccuGUACCGcGCGCGCUUcggGCACc -3'
miRNA:   3'- gUCAUu--CGUGGUuCGUGCGAG---UGUGu -5'
4025 5' -51.6 NC_001650.1 + 69789 0.66 0.991005
Target:  5'- cCAG--GGCGuCCAGGUugGCggUCACACc -3'
miRNA:   3'- -GUCauUCGU-GGUUCGugCG--AGUGUGu -5'
4025 5' -51.6 NC_001650.1 + 143059 0.68 0.967745
Target:  5'- gCGGaGGGCGCCGAG-GCGCUC-CGCc -3'
miRNA:   3'- -GUCaUUCGUGGUUCgUGCGAGuGUGu -5'
4025 5' -51.6 NC_001650.1 + 23306 0.68 0.964449
Target:  5'- aCAGgu-GCGCCucgGGCAgGgUCGCGCAg -3'
miRNA:   3'- -GUCauuCGUGGu--UCGUgCgAGUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 125873 0.76 0.620749
Target:  5'- aCAGc--GCACCcAGCACaGCUCGCACAa -3'
miRNA:   3'- -GUCauuCGUGGuUCGUG-CGAGUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 124543 0.71 0.878363
Target:  5'- gAGUucGGCGCCGAGggaGCGCcgCGCACAg -3'
miRNA:   3'- gUCAu-UCGUGGUUCg--UGCGa-GUGUGU- -5'
4025 5' -51.6 NC_001650.1 + 135651 0.7 0.912166
Target:  5'- gCGGUAcccacGGUGCaCGGGCACGCUCaggaacggGCACAg -3'
miRNA:   3'- -GUCAU-----UCGUG-GUUCGUGCGAG--------UGUGU- -5'
4025 5' -51.6 NC_001650.1 + 111183 0.69 0.934693
Target:  5'- cCAGUcAGGC-CCAGGCG-GCUCAgGCGg -3'
miRNA:   3'- -GUCA-UUCGuGGUUCGUgCGAGUgUGU- -5'
4025 5' -51.6 NC_001650.1 + 146234 0.69 0.934693
Target:  5'- gCAGUGGGUgACCAuGGC-CGCUCGCGgGg -3'
miRNA:   3'- -GUCAUUCG-UGGU-UCGuGCGAGUGUgU- -5'
4025 5' -51.6 NC_001650.1 + 42524 0.69 0.939688
Target:  5'- aGGUGGGcCACC-GGCGCGCccggaccgUCACACc -3'
miRNA:   3'- gUCAUUC-GUGGuUCGUGCG--------AGUGUGu -5'
4025 5' -51.6 NC_001650.1 + 105661 0.69 0.939688
Target:  5'- cCGGaGAGCuCCAAGauCACGCUCAC-CAa -3'
miRNA:   3'- -GUCaUUCGuGGUUC--GUGCGAGUGuGU- -5'
4025 5' -51.6 NC_001650.1 + 29312 0.69 0.948921
Target:  5'- gAGUGAGCACCAgcaugaggaagaGGCACGUguuuaUgACGCc -3'
miRNA:   3'- gUCAUUCGUGGU------------UCGUGCG-----AgUGUGu -5'
4025 5' -51.6 NC_001650.1 + 52773 0.66 0.992159
Target:  5'- gCGGUAGGCGuCCAGG-ACGCccuGCACGu -3'
miRNA:   3'- -GUCAUUCGU-GGUUCgUGCGag-UGUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.