Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4025 | 5' | -51.6 | NC_001650.1 | + | 148079 | 1.09 | 0.008178 |
Target: 5'- cCAGUAAGCACCAAGCACGCUCACACAc -3' miRNA: 3'- -GUCAUUCGUGGUUCGUGCGAGUGUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 135332 | 0.68 | 0.970819 |
Target: 5'- aGGgcAGCACCAGGUccaGCUCGguCGCGg -3' miRNA: 3'- gUCauUCGUGGUUCGug-CGAGU--GUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 65462 | 0.68 | 0.973676 |
Target: 5'- --aUAAGCACCGugacgAGCAUGCucUCugACAa -3' miRNA: 3'- gucAUUCGUGGU-----UCGUGCG--AGugUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 6747 | 0.67 | 0.976325 |
Target: 5'- gCAGUGAGCACCcccuAGUcUGC-CugGCAa -3' miRNA: 3'- -GUCAUUCGUGGu---UCGuGCGaGugUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 173454 | 0.67 | 0.976325 |
Target: 5'- gCAGUGAGCACCcccuAGUcUGC-CugGCAa -3' miRNA: 3'- -GUCAUUCGUGGu---UCGuGCGaGugUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 50750 | 0.67 | 0.981029 |
Target: 5'- gCGGUGGGCGCCGccacCACcuGCUCGCAgGa -3' miRNA: 3'- -GUCAUUCGUGGUuc--GUG--CGAGUGUgU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 116776 | 0.67 | 0.9831 |
Target: 5'- -----cGCACUGAGCAUGCUCugGa- -3' miRNA: 3'- gucauuCGUGGUUCGUGCGAGugUgu -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 82510 | 0.66 | 0.989721 |
Target: 5'- gAGUGccuGUACCGcGCGCGCUUcggGCACc -3' miRNA: 3'- gUCAUu--CGUGGUuCGUGCGAG---UGUGu -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 69789 | 0.66 | 0.991005 |
Target: 5'- cCAG--GGCGuCCAGGUugGCggUCACACc -3' miRNA: 3'- -GUCauUCGU-GGUUCGugCG--AGUGUGu -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 143059 | 0.68 | 0.967745 |
Target: 5'- gCGGaGGGCGCCGAG-GCGCUC-CGCc -3' miRNA: 3'- -GUCaUUCGUGGUUCgUGCGAGuGUGu -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 23306 | 0.68 | 0.964449 |
Target: 5'- aCAGgu-GCGCCucgGGCAgGgUCGCGCAg -3' miRNA: 3'- -GUCauuCGUGGu--UCGUgCgAGUGUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 125873 | 0.76 | 0.620749 |
Target: 5'- aCAGc--GCACCcAGCACaGCUCGCACAa -3' miRNA: 3'- -GUCauuCGUGGuUCGUG-CGAGUGUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 124543 | 0.71 | 0.878363 |
Target: 5'- gAGUucGGCGCCGAGggaGCGCcgCGCACAg -3' miRNA: 3'- gUCAu-UCGUGGUUCg--UGCGa-GUGUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 135651 | 0.7 | 0.912166 |
Target: 5'- gCGGUAcccacGGUGCaCGGGCACGCUCaggaacggGCACAg -3' miRNA: 3'- -GUCAU-----UCGUG-GUUCGUGCGAG--------UGUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 111183 | 0.69 | 0.934693 |
Target: 5'- cCAGUcAGGC-CCAGGCG-GCUCAgGCGg -3' miRNA: 3'- -GUCA-UUCGuGGUUCGUgCGAGUgUGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 146234 | 0.69 | 0.934693 |
Target: 5'- gCAGUGGGUgACCAuGGC-CGCUCGCGgGg -3' miRNA: 3'- -GUCAUUCG-UGGU-UCGuGCGAGUGUgU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 42524 | 0.69 | 0.939688 |
Target: 5'- aGGUGGGcCACC-GGCGCGCccggaccgUCACACc -3' miRNA: 3'- gUCAUUC-GUGGuUCGUGCG--------AGUGUGu -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 105661 | 0.69 | 0.939688 |
Target: 5'- cCGGaGAGCuCCAAGauCACGCUCAC-CAa -3' miRNA: 3'- -GUCaUUCGuGGUUC--GUGCGAGUGuGU- -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 29312 | 0.69 | 0.948921 |
Target: 5'- gAGUGAGCACCAgcaugaggaagaGGCACGUguuuaUgACGCc -3' miRNA: 3'- gUCAUUCGUGGU------------UCGUGCG-----AgUGUGu -5' |
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4025 | 5' | -51.6 | NC_001650.1 | + | 52773 | 0.66 | 0.992159 |
Target: 5'- gCGGUAGGCGuCCAGG-ACGCccuGCACGu -3' miRNA: 3'- -GUCAUUCGU-GGUUCgUGCGag-UGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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