miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4026 3' -51.9 NC_001650.1 + 57232 0.66 0.991767
Target:  5'- uGCUGcUG-UGGCUGGggUUggGgcGGCu -3'
miRNA:   3'- -UGAC-ACuGCCGACCuuGGuuCaaCUG- -5'
4026 3' -51.9 NC_001650.1 + 129635 0.66 0.991767
Target:  5'- gACUG-GGCGGCggUGGcGGCCGAGUUc-- -3'
miRNA:   3'- -UGACaCUGCCG--ACC-UUGGUUCAAcug -5'
4026 3' -51.9 NC_001650.1 + 39623 0.66 0.991767
Target:  5'- gGCUGUGAUGGaugacaGGGACCcGGgccaGGCg -3'
miRNA:   3'- -UGACACUGCCga----CCUUGGuUCaa--CUG- -5'
4026 3' -51.9 NC_001650.1 + 3002 0.66 0.989258
Target:  5'- gGCUGUGAUccaaGGUguccgGGGGuCCAagggGGUUGGCa -3'
miRNA:   3'- -UGACACUG----CCGa----CCUU-GGU----UCAACUG- -5'
4026 3' -51.9 NC_001650.1 + 169709 0.66 0.989258
Target:  5'- gGCUGUGAUccaaGGUguccgGGGGuCCAagggGGUUGGCa -3'
miRNA:   3'- -UGACACUG----CCGa----CCUU-GGU----UCAACUG- -5'
4026 3' -51.9 NC_001650.1 + 129948 0.66 0.989258
Target:  5'- gGCUGUGGCGGgcacgcccCUGGAggcGCCcg--UGGCg -3'
miRNA:   3'- -UGACACUGCC--------GACCU---UGGuucaACUG- -5'
4026 3' -51.9 NC_001650.1 + 119718 0.67 0.984423
Target:  5'- cAUUGUGggucGCGuGCUGGggUCugagaacauAGUUGACg -3'
miRNA:   3'- -UGACAC----UGC-CGACCuuGGu--------UCAACUG- -5'
4026 3' -51.9 NC_001650.1 + 169951 0.68 0.960047
Target:  5'- gACUGUGGCGGCcaucuUGGAuccCCAugccUGGCa -3'
miRNA:   3'- -UGACACUGCCG-----ACCUu--GGUuca-ACUG- -5'
4026 3' -51.9 NC_001650.1 + 3244 0.68 0.960047
Target:  5'- gACUGUGGCGGCcaucuUGGAuccCCAugccUGGCa -3'
miRNA:   3'- -UGACACUGCCG-----ACCUu--GGUuca-ACUG- -5'
4026 3' -51.9 NC_001650.1 + 76168 0.7 0.926834
Target:  5'- uACgggGUGACGGCcaucuaccaacaggUGGAgGCCGAGUgcaggGGCg -3'
miRNA:   3'- -UGa--CACUGCCG--------------ACCU-UGGUUCAa----CUG- -5'
4026 3' -51.9 NC_001650.1 + 138846 0.7 0.917199
Target:  5'- aACUGU-ACgGGCUGG-GCCGGGUUGGg -3'
miRNA:   3'- -UGACAcUG-CCGACCuUGGUUCAACUg -5'
4026 3' -51.9 NC_001650.1 + 57563 0.71 0.898438
Target:  5'- cCUGUGguugcagcuGCGGCUGGGGCagGGGUUGGg -3'
miRNA:   3'- uGACAC---------UGCCGACCUUGg-UUCAACUg -5'
4026 3' -51.9 NC_001650.1 + 148711 1.1 0.006987
Target:  5'- gACUGUGACGGCUGGAACCAAGUUGACu -3'
miRNA:   3'- -UGACACUGCCGACCUUGGUUCAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.