miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4026 5' -51.9 NC_001650.1 + 144588 0.66 0.99292
Target:  5'- cCGCCuggcccgGGUCCCugucAUCCaUCACAGc -3'
miRNA:   3'- uGUGGuaa----CCAGGG----UAGGaAGUGUCc -5'
4026 5' -51.9 NC_001650.1 + 108174 0.66 0.99292
Target:  5'- uACACCA-UGGgacugUCCGUCCccUUCcCGGGa -3'
miRNA:   3'- -UGUGGUaACCa----GGGUAGG--AAGuGUCC- -5'
4026 5' -51.9 NC_001650.1 + 128299 0.66 0.99292
Target:  5'- -aGCCGggGGUCaaggaCAgggCCUUCGCGGa -3'
miRNA:   3'- ugUGGUaaCCAGg----GUa--GGAAGUGUCc -5'
4026 5' -51.9 NC_001650.1 + 84792 0.66 0.991875
Target:  5'- cGCACCucggUGGUCCCGguggugggCUUgGCAGa -3'
miRNA:   3'- -UGUGGua--ACCAGGGUag------GAAgUGUCc -5'
4026 5' -51.9 NC_001650.1 + 106044 0.66 0.991875
Target:  5'- aGCACCAc-GGUCaCCAUagaCU-CGCGGGu -3'
miRNA:   3'- -UGUGGUaaCCAG-GGUAg--GAaGUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 127944 0.66 0.99071
Target:  5'- gGCACCAcccccCCCGUCCUUCGCc-- -3'
miRNA:   3'- -UGUGGUaaccaGGGUAGGAAGUGucc -5'
4026 5' -51.9 NC_001650.1 + 157772 0.66 0.989419
Target:  5'- cACGCUGgccUGGgugCCCAcguucUCCUcCACGGGg -3'
miRNA:   3'- -UGUGGUa--ACCa--GGGU-----AGGAaGUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 63042 0.67 0.987991
Target:  5'- cGCACCcgUaGGUCUgGUCgUggaGCAGGg -3'
miRNA:   3'- -UGUGGuaA-CCAGGgUAGgAag-UGUCC- -5'
4026 5' -51.9 NC_001650.1 + 136930 0.67 0.987066
Target:  5'- aACACCAggUUGGUCUugaacuugguaaaguCGUCCUggcuCAGGa -3'
miRNA:   3'- -UGUGGU--AACCAGG---------------GUAGGAagu-GUCC- -5'
4026 5' -51.9 NC_001650.1 + 103338 0.67 0.986419
Target:  5'- gACGCCAgagauaauGUCCUggAUCCU-CGCGGGg -3'
miRNA:   3'- -UGUGGUaac-----CAGGG--UAGGAaGUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 156342 0.67 0.986086
Target:  5'- uCACCAcguaggGGUCCC-UCCUgaccgaggccacCACGGGg -3'
miRNA:   3'- uGUGGUaa----CCAGGGuAGGAa-----------GUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 70523 0.67 0.982805
Target:  5'- -gACCAUaaauuucucggUGaUCCCcUCCUUCAUAGGc -3'
miRNA:   3'- ugUGGUA-----------ACcAGGGuAGGAAGUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 157386 0.67 0.980747
Target:  5'- -aGCCGUUGaGgCCCGcggCCUUCuGCAGGa -3'
miRNA:   3'- ugUGGUAAC-CaGGGUa--GGAAG-UGUCC- -5'
4026 5' -51.9 NC_001650.1 + 38251 0.68 0.976087
Target:  5'- gACGCCAacgGGUCCCGggacuUCCU-CGCccGGGc -3'
miRNA:   3'- -UGUGGUaa-CCAGGGU-----AGGAaGUG--UCC- -5'
4026 5' -51.9 NC_001650.1 + 155124 0.69 0.953306
Target:  5'- uGCACCG-UGGgcaCCGUCagUUCGCGGGc -3'
miRNA:   3'- -UGUGGUaACCag-GGUAGg-AAGUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 101354 0.73 0.807371
Target:  5'- gGCACCuccUGGUCCCcaCCU-CGCGGGu -3'
miRNA:   3'- -UGUGGua-ACCAGGGuaGGAaGUGUCC- -5'
4026 5' -51.9 NC_001650.1 + 148745 1.11 0.006324
Target:  5'- cACACCAUUGGUCCCAUCCUUCACAGGa -3'
miRNA:   3'- -UGUGGUAACCAGGGUAGGAAGUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.