miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4027 3' -60.4 NC_001650.1 + 26733 0.66 0.769444
Target:  5'- cGGGCCcggccuggAGGGGCUgugcgccgcCUCcaGGCAGCUCu -3'
miRNA:   3'- aCUCGG--------UCUCCGA---------GAGc-CCGUCGAGc -5'
4027 3' -60.4 NC_001650.1 + 56953 0.66 0.769444
Target:  5'- cUGAGUCAGAuGCggUCcCGGcGCGGCUCc -3'
miRNA:   3'- -ACUCGGUCUcCG--AGaGCC-CGUCGAGc -5'
4027 3' -60.4 NC_001650.1 + 162273 0.66 0.769444
Target:  5'- gGuAGCCGGGGGUcCUgcagaaggaggcCGGGgAGCUCa -3'
miRNA:   3'- aC-UCGGUCUCCGaGA------------GCCCgUCGAGc -5'
4027 3' -60.4 NC_001650.1 + 98150 0.66 0.759357
Target:  5'- -aGGCCuucuuGAGGCUCUCGGugacgacGCAGUggGg -3'
miRNA:   3'- acUCGGu----CUCCGAGAGCC-------CGUCGagC- -5'
4027 3' -60.4 NC_001650.1 + 83337 0.66 0.751009
Target:  5'- aGGGCUucGGGGGCuuuaUCUCGGGCuGUgUGg -3'
miRNA:   3'- aCUCGG--UCUCCG----AGAGCCCGuCGaGC- -5'
4027 3' -60.4 NC_001650.1 + 112757 0.66 0.741641
Target:  5'- aUGAGCCuguGGGcGUUCUguggggGGGCuGCUCGu -3'
miRNA:   3'- -ACUCGGu--CUC-CGAGAg-----CCCGuCGAGC- -5'
4027 3' -60.4 NC_001650.1 + 40562 0.66 0.741641
Target:  5'- cGAGCCGGGGGacg-CGGGCucGCgCGu -3'
miRNA:   3'- aCUCGGUCUCCgagaGCCCGu-CGaGC- -5'
4027 3' -60.4 NC_001650.1 + 133901 0.66 0.741641
Target:  5'- gGGGCCGggagggacGAGGCgcgcUUUGGGC-GCUCGc -3'
miRNA:   3'- aCUCGGU--------CUCCGa---GAGCCCGuCGAGC- -5'
4027 3' -60.4 NC_001650.1 + 106621 0.66 0.732182
Target:  5'- cGAGCUAGGGGuUUUUUGGGUcagAGUUUGu -3'
miRNA:   3'- aCUCGGUCUCC-GAGAGCCCG---UCGAGC- -5'
4027 3' -60.4 NC_001650.1 + 150431 0.66 0.722643
Target:  5'- gGAGgCGGAGGC-CU-GGGUuuaGGCUCa -3'
miRNA:   3'- aCUCgGUCUCCGaGAgCCCG---UCGAGc -5'
4027 3' -60.4 NC_001650.1 + 56829 0.66 0.722643
Target:  5'- cGGGCUcucGGGGCUC-CuGGCgGGCUCGg -3'
miRNA:   3'- aCUCGGu--CUCCGAGaGcCCG-UCGAGC- -5'
4027 3' -60.4 NC_001650.1 + 47541 0.66 0.722643
Target:  5'- cGGGCCcacAGAgcgGGCgaCUCcGGCGGCUCGc -3'
miRNA:   3'- aCUCGG---UCU---CCGa-GAGcCCGUCGAGC- -5'
4027 3' -60.4 NC_001650.1 + 150491 0.66 0.722643
Target:  5'- gGAGgCGGAGGC-CU-GGGUuuaGGCUCa -3'
miRNA:   3'- aCUCgGUCUCCGaGAgCCCG---UCGAGc -5'
4027 3' -60.4 NC_001650.1 + 159692 0.66 0.722643
Target:  5'- -cGGCCAGGGGgUag-GGGCAGC-CGg -3'
miRNA:   3'- acUCGGUCUCCgAgagCCCGUCGaGC- -5'
4027 3' -60.4 NC_001650.1 + 162193 0.67 0.713031
Target:  5'- gUGGGCCAG-GGC-CgggaCGGGCAcGCgggCGa -3'
miRNA:   3'- -ACUCGGUCuCCGaGa---GCCCGU-CGa--GC- -5'
4027 3' -60.4 NC_001650.1 + 60101 0.67 0.713031
Target:  5'- aGAGUCuuuGGGGaGCUCUCGGauGCAcGCUCc -3'
miRNA:   3'- aCUCGG---UCUC-CGAGAGCC--CGU-CGAGc -5'
4027 3' -60.4 NC_001650.1 + 62872 0.67 0.703355
Target:  5'- aGAGCCAgGGGGCUC-CGGaGCAcC-CGg -3'
miRNA:   3'- aCUCGGU-CUCCGAGaGCC-CGUcGaGC- -5'
4027 3' -60.4 NC_001650.1 + 172748 0.67 0.697521
Target:  5'- cGAGCCGGAGGCUCcCcacucaccugccgguGGGgAGgUUGu -3'
miRNA:   3'- aCUCGGUCUCCGAGaG---------------CCCgUCgAGC- -5'
4027 3' -60.4 NC_001650.1 + 6041 0.67 0.697521
Target:  5'- cGAGCCGGAGGCUCcCcacucaccugccgguGGGgAGgUUGu -3'
miRNA:   3'- aCUCGGUCUCCGAGaG---------------CCCgUCgAGC- -5'
4027 3' -60.4 NC_001650.1 + 26559 0.67 0.693622
Target:  5'- aGGGCCAGAauuuGCaUCUCGGGCacguccaggcAGgUCGg -3'
miRNA:   3'- aCUCGGUCUc---CG-AGAGCCCG----------UCgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.