miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4027 5' -53.9 NC_001650.1 + 161056 0.66 0.973998
Target:  5'- --aGGGCgcgGUGGGCCUGUaggaggccgUCCCGc -3'
miRNA:   3'- gagCUCGagaUACUCGGACA---------AGGGCu -5'
4027 5' -53.9 NC_001650.1 + 71038 0.66 0.973998
Target:  5'- uCUCGAGCgCggcGGGCCUGggCCagcaGAa -3'
miRNA:   3'- -GAGCUCGaGauaCUCGGACaaGGg---CU- -5'
4027 5' -53.9 NC_001650.1 + 130009 0.66 0.973998
Target:  5'- --gGAGC-CUGuaacccUGAGCCUGggcggCCCGGg -3'
miRNA:   3'- gagCUCGaGAU------ACUCGGACaa---GGGCU- -5'
4027 5' -53.9 NC_001650.1 + 82331 0.66 0.971248
Target:  5'- -aCGAGgUCUAUGAcuCCUGgUCCUGGc -3'
miRNA:   3'- gaGCUCgAGAUACUc-GGACaAGGGCU- -5'
4027 5' -53.9 NC_001650.1 + 132390 0.66 0.968295
Target:  5'- -cCGAGCUCUuUGAcgGCCUGg--CCGGg -3'
miRNA:   3'- gaGCUCGAGAuACU--CGGACaagGGCU- -5'
4027 5' -53.9 NC_001650.1 + 36426 0.66 0.968295
Target:  5'- gUCGcggcaGGCUCUccagGAGCgUGUUCCCc- -3'
miRNA:   3'- gAGC-----UCGAGAua--CUCGgACAAGGGcu -5'
4027 5' -53.9 NC_001650.1 + 152821 0.67 0.958158
Target:  5'- -gUGGGuCUCUAUGcAGUCUGUcagccUCCUGAg -3'
miRNA:   3'- gaGCUC-GAGAUAC-UCGGACA-----AGGGCU- -5'
4027 5' -53.9 NC_001650.1 + 91467 0.68 0.936716
Target:  5'- aCUCGAGcCUCaggaacccGGGCgUGUUCUCGAg -3'
miRNA:   3'- -GAGCUC-GAGaua-----CUCGgACAAGGGCU- -5'
4027 5' -53.9 NC_001650.1 + 113921 0.68 0.931716
Target:  5'- cCUCu-GCUUgGUGGGCCUGcgCCCGu -3'
miRNA:   3'- -GAGcuCGAGaUACUCGGACaaGGGCu -5'
4027 5' -53.9 NC_001650.1 + 32649 0.68 0.931716
Target:  5'- --aGAGCUUgaaccUGAGCCUGaaCCUGAa -3'
miRNA:   3'- gagCUCGAGau---ACUCGGACaaGGGCU- -5'
4027 5' -53.9 NC_001650.1 + 49865 0.71 0.82377
Target:  5'- uUCGAGCUCgAUGGGCgUGUgggacacggagggcCCCGGg -3'
miRNA:   3'- gAGCUCGAGaUACUCGgACAa-------------GGGCU- -5'
4027 5' -53.9 NC_001650.1 + 155372 1.1 0.00499
Target:  5'- cCUCGAGCUCUAUGAGCCUGUUCCCGAa -3'
miRNA:   3'- -GAGCUCGAGAUACUCGGACAAGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.