miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4028 3' -63.3 NC_001650.1 + 68289 0.66 0.652302
Target:  5'- aCCAgcugcugguUCUCCAGg-CCCUGcAGGUCCAGg -3'
miRNA:   3'- aGGU---------AGGGGUCgaGGGGC-UCCGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 145580 0.66 0.652302
Target:  5'- --aGUCCCCGGg--CUCGAGGCCCGu -3'
miRNA:   3'- aggUAGGGGUCgagGGGCUCCGGGUc -5'
4028 3' -63.3 NC_001650.1 + 123889 0.66 0.652302
Target:  5'- aCCGgcgCCUgCAGCUCCCCGcccuccuggGGGaCCAGu -3'
miRNA:   3'- aGGUa--GGG-GUCGAGGGGC---------UCCgGGUC- -5'
4028 3' -63.3 NC_001650.1 + 169743 0.66 0.652302
Target:  5'- cUCCAgccCCCUGGCaacagcugacgUCgCCG-GGCCCGGa -3'
miRNA:   3'- -AGGUa--GGGGUCG-----------AGgGGCuCCGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 3036 0.66 0.652302
Target:  5'- cUCCAgccCCCUGGCaacagcugacgUCgCCG-GGCCCGGa -3'
miRNA:   3'- -AGGUa--GGGGUCG-----------AGgGGCuCCGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 128018 0.66 0.642648
Target:  5'- gUCCAUCCUCA---CCgCCGAGaCCCAGa -3'
miRNA:   3'- -AGGUAGGGGUcgaGG-GGCUCcGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 117354 0.66 0.642648
Target:  5'- cCCGcCCCCGGCgccUCCCgCGGcGCCCGc -3'
miRNA:   3'- aGGUaGGGGUCG---AGGG-GCUcCGGGUc -5'
4028 3' -63.3 NC_001650.1 + 57451 0.66 0.642648
Target:  5'- aUCCcUCCCCcccaUUCCCCcGGGCCCc- -3'
miRNA:   3'- -AGGuAGGGGuc--GAGGGGcUCCGGGuc -5'
4028 3' -63.3 NC_001650.1 + 52845 0.66 0.638783
Target:  5'- cUCCAcCCCCAGCcucuuggccagagUCCCGuacaGGGCCCc- -3'
miRNA:   3'- -AGGUaGGGGUCGa------------GGGGC----UCCGGGuc -5'
4028 3' -63.3 NC_001650.1 + 99803 0.66 0.632986
Target:  5'- cUCCG-CCCC-GCUggagaCCCCGAuGCUCAGg -3'
miRNA:   3'- -AGGUaGGGGuCGA-----GGGGCUcCGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 20896 0.66 0.632986
Target:  5'- gUCaCGUCCCCcGC-CgCCGGGGCCg-- -3'
miRNA:   3'- -AG-GUAGGGGuCGaGgGGCUCCGGguc -5'
4028 3' -63.3 NC_001650.1 + 136577 0.66 0.632986
Target:  5'- gUCCAUCgCC-GCaccagCCCC-AGGCCCGa -3'
miRNA:   3'- -AGGUAGgGGuCGa----GGGGcUCCGGGUc -5'
4028 3' -63.3 NC_001650.1 + 71388 0.66 0.632986
Target:  5'- gCCGgcgcgCUCCAGgccgccUUUCCCGAGGCCCc- -3'
miRNA:   3'- aGGUa----GGGGUC------GAGGGGCUCCGGGuc -5'
4028 3' -63.3 NC_001650.1 + 54183 0.66 0.632986
Target:  5'- gUCCAgUCgCCGGUggagCuCCCGGGccGCCCAGg -3'
miRNA:   3'- -AGGU-AGgGGUCGa---G-GGGCUC--CGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 106330 0.66 0.632986
Target:  5'- cUCCGUCCCCgugAGCUCCaggaccagCGcGGCCUu- -3'
miRNA:   3'- -AGGUAGGGG---UCGAGGg-------GCuCCGGGuc -5'
4028 3' -63.3 NC_001650.1 + 67187 0.66 0.623323
Target:  5'- cCCgAUCUCCAGCUCgCUgugcagggcguaCGGGuGCCCGGa -3'
miRNA:   3'- aGG-UAGGGGUCGAG-GG------------GCUC-CGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 169519 0.66 0.623323
Target:  5'- uUCCcUCaCCUcGCUCgCCCGccGGGUCCGGg -3'
miRNA:   3'- -AGGuAG-GGGuCGAG-GGGC--UCCGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 2812 0.66 0.623323
Target:  5'- uUCCcUCaCCUcGCUCgCCCGccGGGUCCGGg -3'
miRNA:   3'- -AGGuAG-GGGuCGAG-GGGC--UCCGGGUC- -5'
4028 3' -63.3 NC_001650.1 + 172497 0.66 0.623323
Target:  5'- gCgGUCCCCcuuAGUUCCCCauuGGGCCUuAGg -3'
miRNA:   3'- aGgUAGGGG---UCGAGGGGc--UCCGGG-UC- -5'
4028 3' -63.3 NC_001650.1 + 141241 0.66 0.623323
Target:  5'- cCCGgggucCCCCGGUUCgCCCucGGCCCc- -3'
miRNA:   3'- aGGUa----GGGGUCGAG-GGGcuCCGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.