miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4028 5' -52.5 NC_001650.1 + 101009 0.66 0.989419
Target:  5'- cGCCCc-CCUGUUCAGcuuggaCAGCa -3'
miRNA:   3'- aCGGGcaGGACAAGUCcuuuugGUCG- -5'
4028 5' -52.5 NC_001650.1 + 153003 0.66 0.989419
Target:  5'- gGCCCGcCCcGUUgAGGAccucguUCAGCc -3'
miRNA:   3'- aCGGGCaGGaCAAgUCCUuuu---GGUCG- -5'
4028 5' -52.5 NC_001650.1 + 110744 0.66 0.989419
Target:  5'- gGCCCGgggggCCguggCAGGcGAAGCCcGCg -3'
miRNA:   3'- aCGGGCa----GGacaaGUCC-UUUUGGuCG- -5'
4028 5' -52.5 NC_001650.1 + 64695 0.66 0.989419
Target:  5'- cUGCCCGUUCUGa--AGGGGcACCuGa -3'
miRNA:   3'- -ACGGGCAGGACaagUCCUUuUGGuCg -5'
4028 5' -52.5 NC_001650.1 + 77395 0.66 0.989419
Target:  5'- cUGCaCCGUCCaUGgagCGGGuggccgucCCGGCg -3'
miRNA:   3'- -ACG-GGCAGG-ACaa-GUCCuuuu----GGUCG- -5'
4028 5' -52.5 NC_001650.1 + 123908 0.66 0.989419
Target:  5'- cGCCC-UCCU-----GGggGACCAGUa -3'
miRNA:   3'- aCGGGcAGGAcaaguCCuuUUGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 102704 0.66 0.987991
Target:  5'- cUGCCC--CgUGUUCAGGGAGcUgAGCg -3'
miRNA:   3'- -ACGGGcaGgACAAGUCCUUUuGgUCG- -5'
4028 5' -52.5 NC_001650.1 + 127562 0.66 0.987991
Target:  5'- aGCCCauggcuaCUGcgCGGGGGggUCAGCu -3'
miRNA:   3'- aCGGGcag----GACaaGUCCUUuuGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 138040 0.66 0.987991
Target:  5'- aUGCCgGg--UGggCAGGGA-GCCAGCa -3'
miRNA:   3'- -ACGGgCaggACaaGUCCUUuUGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 107307 0.66 0.987991
Target:  5'- cUGCCUGUUCUGcagCAGGucccccacgGAGACCcccgggGGCa -3'
miRNA:   3'- -ACGGGCAGGACaa-GUCC---------UUUUGG------UCG- -5'
4028 5' -52.5 NC_001650.1 + 34457 0.66 0.987066
Target:  5'- cGCCCGgaugCUUa-UCccccaggcccaggggAGGAAAGCCAGCu -3'
miRNA:   3'- aCGGGCa---GGAcaAG---------------UCCUUUUGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 91932 0.66 0.986419
Target:  5'- cUGaCCGUCUUGUUCucu---GCCAGCu -3'
miRNA:   3'- -ACgGGCAGGACAAGuccuuuUGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 109141 0.66 0.986419
Target:  5'- cGCuCCGcUCCcgggGUcUCAGGAcgcGAGCCAGg -3'
miRNA:   3'- aCG-GGC-AGGa---CA-AGUCCU---UUUGGUCg -5'
4028 5' -52.5 NC_001650.1 + 66366 0.66 0.984693
Target:  5'- cGCCuUGUCCcucggGUugaaggUCAGGAAGuacuucuCCAGCa -3'
miRNA:   3'- aCGG-GCAGGa----CA------AGUCCUUUu------GGUCG- -5'
4028 5' -52.5 NC_001650.1 + 94973 0.66 0.984512
Target:  5'- gGCCCucGUUCaGUUCGGuGGcgaagagGGGCCAGCa -3'
miRNA:   3'- aCGGG--CAGGaCAAGUC-CU-------UUUGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 75504 0.66 0.982805
Target:  5'- uUGCCCGUCCUGgcCAaccuGAucAUguGCg -3'
miRNA:   3'- -ACGGGCAGGACaaGUc---CUuuUGguCG- -5'
4028 5' -52.5 NC_001650.1 + 148414 0.66 0.982805
Target:  5'- cGCCCc-CCUGgcgCGGGAcgGCCGccGCg -3'
miRNA:   3'- aCGGGcaGGACaa-GUCCUuuUGGU--CG- -5'
4028 5' -52.5 NC_001650.1 + 121620 0.66 0.982805
Target:  5'- gGCCCGUCCacuccuaccUCAGGAucuuCCuGCc -3'
miRNA:   3'- aCGGGCAGGaca------AGUCCUuuu-GGuCG- -5'
4028 5' -52.5 NC_001650.1 + 167454 0.67 0.980747
Target:  5'- aGCCC--CCUGUgacUCAGuGAGAGUCAGCc -3'
miRNA:   3'- aCGGGcaGGACA---AGUC-CUUUUGGUCG- -5'
4028 5' -52.5 NC_001650.1 + 53745 0.67 0.980747
Target:  5'- gGCCUugaagGUCCUGUgCAGccAGACCAGa -3'
miRNA:   3'- aCGGG-----CAGGACAaGUCcuUUUGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.