miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 3' -58.7 NC_001650.1 + 61973 0.66 0.819313
Target:  5'- gAGgAGCUcguGGGGCaccUCGCccccGGCCUCGg -3'
miRNA:   3'- -UUgUCGGuu-UCCCG---AGCGu---CCGGAGC- -5'
4029 3' -58.7 NC_001650.1 + 134319 0.66 0.819313
Target:  5'- gAACGGCCAGGGcGGCcaggucgccaCGCcugauggcgagGGGCCUCu -3'
miRNA:   3'- -UUGUCGGUUUC-CCGa---------GCG-----------UCCGGAGc -5'
4029 3' -58.7 NC_001650.1 + 55535 0.66 0.819313
Target:  5'- -uCGGCCAGgauGcGCUCGguGGCCUgCGc -3'
miRNA:   3'- uuGUCGGUUu--CcCGAGCguCCGGA-GC- -5'
4029 3' -58.7 NC_001650.1 + 100809 0.66 0.816755
Target:  5'- cGCAGCCcucacGGGGCguccucaGCugguaccgacggcaGGGCCUCGg -3'
miRNA:   3'- uUGUCGGuu---UCCCGag-----CG--------------UCCGGAGC- -5'
4029 3' -58.7 NC_001650.1 + 79067 0.66 0.81073
Target:  5'- uAGCGGCCGAGgcgucGGGCcC-CGGGCCUgGc -3'
miRNA:   3'- -UUGUCGGUUU-----CCCGaGcGUCCGGAgC- -5'
4029 3' -58.7 NC_001650.1 + 52718 0.66 0.81073
Target:  5'- aGACGGuCCAGGGGGCcaCGguGGCgguCUCc -3'
miRNA:   3'- -UUGUC-GGUUUCCCGa-GCguCCG---GAGc -5'
4029 3' -58.7 NC_001650.1 + 90454 0.66 0.809863
Target:  5'- cACAGCUuGAAGGaCUCGUgguagauGGGCCUCa -3'
miRNA:   3'- uUGUCGG-UUUCCcGAGCG-------UCCGGAGc -5'
4029 3' -58.7 NC_001650.1 + 146293 0.66 0.801989
Target:  5'- cACGGCCGGGGGGauguugUGCuGGGCCgCGu -3'
miRNA:   3'- uUGUCGGUUUCCCga----GCG-UCCGGaGC- -5'
4029 3' -58.7 NC_001650.1 + 94771 0.66 0.801106
Target:  5'- --aAGCUcAAGGGCUacaccuucauaccCGUGGGCUUCGg -3'
miRNA:   3'- uugUCGGuUUCCCGA-------------GCGUCCGGAGC- -5'
4029 3' -58.7 NC_001650.1 + 61022 0.66 0.793097
Target:  5'- gGGCAGCCAcuGGGacugcCUCGUguagAGGCC-CGa -3'
miRNA:   3'- -UUGUCGGUuuCCC-----GAGCG----UCCGGaGC- -5'
4029 3' -58.7 NC_001650.1 + 17221 0.66 0.784064
Target:  5'- aGAUGGCCGccAGGGGgUUGU-GGCCUCu -3'
miRNA:   3'- -UUGUCGGU--UUCCCgAGCGuCCGGAGc -5'
4029 3' -58.7 NC_001650.1 + 157383 0.66 0.784064
Target:  5'- cGCAGCCGuuGaGGCcCGC-GGCCUUc -3'
miRNA:   3'- uUGUCGGUuuC-CCGaGCGuCCGGAGc -5'
4029 3' -58.7 NC_001650.1 + 96482 0.66 0.784064
Target:  5'- uGGCAGCCAGAGGGgacgggUGCuGGCUcuUCa -3'
miRNA:   3'- -UUGUCGGUUUCCCga----GCGuCCGG--AGc -5'
4029 3' -58.7 NC_001650.1 + 183928 0.66 0.784064
Target:  5'- aGAUGGCCGccAGGGGgUUGU-GGCCUCu -3'
miRNA:   3'- -UUGUCGGU--UUCCCgAGCGuCCGGAGc -5'
4029 3' -58.7 NC_001650.1 + 156865 0.66 0.774897
Target:  5'- ---uGCUcgGGGGuCUCGCAGcCCUCGa -3'
miRNA:   3'- uuguCGGuuUCCC-GAGCGUCcGGAGC- -5'
4029 3' -58.7 NC_001650.1 + 22156 0.66 0.774897
Target:  5'- cAACGGCCugcuGGGCUaccugUGCAGGCuCUaCGc -3'
miRNA:   3'- -UUGUCGGuuu-CCCGA-----GCGUCCG-GA-GC- -5'
4029 3' -58.7 NC_001650.1 + 140161 0.66 0.774897
Target:  5'- uAACGGCuCAGAGGGaCUCauGCGGGaUCUUGc -3'
miRNA:   3'- -UUGUCG-GUUUCCC-GAG--CGUCC-GGAGC- -5'
4029 3' -58.7 NC_001650.1 + 155337 0.67 0.756199
Target:  5'- --gAGCCAGAGGcucucgggcaGCUCGgAGGCgUUGg -3'
miRNA:   3'- uugUCGGUUUCC----------CGAGCgUCCGgAGC- -5'
4029 3' -58.7 NC_001650.1 + 82107 0.67 0.756199
Target:  5'- uGACcGUCccuGGGaCUCGCAcccGGCCUCGg -3'
miRNA:   3'- -UUGuCGGuuuCCC-GAGCGU---CCGGAGC- -5'
4029 3' -58.7 NC_001650.1 + 136222 0.67 0.746685
Target:  5'- --aGGCCAGAaacaGGCUCuGCAGGaCCUCc -3'
miRNA:   3'- uugUCGGUUUc---CCGAG-CGUCC-GGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.