miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 120116 0.66 0.737801
Target:  5'- cGCCcugaAGG-UGCCCagcuugugggucugcGGGGGCACCagCCu- -3'
miRNA:   3'- -CGG----UCCaACGGG---------------UCCCCGUGGa-GGuc -5'
4029 5' -61.3 NC_001650.1 + 138860 0.66 0.737801
Target:  5'- gGCCGGGUUggguuugggaaccgaGCuCCGGGGGCgaGCUgcuaCAGg -3'
miRNA:   3'- -CGGUCCAA---------------CG-GGUCCCCG--UGGag--GUC- -5'
4029 5' -61.3 NC_001650.1 + 119940 0.66 0.734045
Target:  5'- --aAGG-UGCCCcGGGGCuCCUgCGGg -3'
miRNA:   3'- cggUCCaACGGGuCCCCGuGGAgGUC- -5'
4029 5' -61.3 NC_001650.1 + 11680 0.66 0.734045
Target:  5'- gGCCcaauGGggGCCUAGGGG-GCCUgcCCAc -3'
miRNA:   3'- -CGGu---CCaaCGGGUCCCCgUGGA--GGUc -5'
4029 5' -61.3 NC_001650.1 + 178387 0.66 0.734045
Target:  5'- gGCCcaauGGggGCCUAGGGG-GCCUgcCCAc -3'
miRNA:   3'- -CGGu---CCaaCGGGUCCCCgUGGA--GGUc -5'
4029 5' -61.3 NC_001650.1 + 53335 0.66 0.734045
Target:  5'- cGCUcguGGGU--CUCGGGGGCGCUcuugUCCAGc -3'
miRNA:   3'- -CGG---UCCAacGGGUCCCCGUGG----AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 45118 0.66 0.73122
Target:  5'- gGCCGcGGUU-CCCAGGgagcucgcaacccaGGCGgUUCCAGg -3'
miRNA:   3'- -CGGU-CCAAcGGGUCC--------------CCGUgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 58769 0.66 0.724601
Target:  5'- cGUgAGGUgcaGcCCCAGGGuccaucccacguGCGCCUCCuGa -3'
miRNA:   3'- -CGgUCCAa--C-GGGUCCC------------CGUGGAGGuC- -5'
4029 5' -61.3 NC_001650.1 + 101927 0.66 0.724601
Target:  5'- gGgCGGGUgggGCgagCgGGGGGCucccuCCUCCGGg -3'
miRNA:   3'- -CgGUCCAa--CG---GgUCCCCGu----GGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 63699 0.66 0.724601
Target:  5'- cGCCGGc--GCCCAGaGGCACCUgCu- -3'
miRNA:   3'- -CGGUCcaaCGGGUCcCCGUGGAgGuc -5'
4029 5' -61.3 NC_001650.1 + 130662 0.66 0.724601
Target:  5'- gGCCAGGaggGUcaCCGGGGGCaagGCCgCCGu -3'
miRNA:   3'- -CGGUCCaa-CG--GGUCCCCG---UGGaGGUc -5'
4029 5' -61.3 NC_001650.1 + 43973 0.66 0.723652
Target:  5'- gGCCGGGcugaGCCCAGGguuacaugcucccGGCGgCUUUAGg -3'
miRNA:   3'- -CGGUCCaa--CGGGUCC-------------CCGUgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 52620 0.66 0.723652
Target:  5'- gGCCAcug-GCCCGGGGGUccucggcACCUcgcgCCAGa -3'
miRNA:   3'- -CGGUccaaCGGGUCCCCG-------UGGA----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 76191 0.66 0.715083
Target:  5'- -aCAGGUggagGCCgagugCAGGGGCGUCUCCc- -3'
miRNA:   3'- cgGUCCAa---CGG-----GUCCCCGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 157402 0.66 0.715083
Target:  5'- cCCAGGUcgGCCaacucgaAGGGGCGCgcggCUCCc- -3'
miRNA:   3'- cGGUCCAa-CGGg------UCCCCGUG----GAGGuc -5'
4029 5' -61.3 NC_001650.1 + 133662 0.66 0.715083
Target:  5'- aCCGGGUUGCgCGGGcacucCACCgCCAGg -3'
miRNA:   3'- cGGUCCAACGgGUCCcc---GUGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 122083 0.66 0.715083
Target:  5'- uGCUGGG-UGCuCCAGGGaacaGCCUCCu- -3'
miRNA:   3'- -CGGUCCaACG-GGUCCCcg--UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 64068 0.66 0.713171
Target:  5'- cGCCAGGgaccugcugaggcUggUGCCCccgcagacccacaAGcuGGGCACCUUCAGg -3'
miRNA:   3'- -CGGUCC-------------A--ACGGG-------------UC--CCCGUGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 125020 0.66 0.705499
Target:  5'- cGCCagAGGggGuCCCGGGGGCGgaggaCgCCGGg -3'
miRNA:   3'- -CGG--UCCaaC-GGGUCCCCGUg----GaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 162269 0.66 0.705499
Target:  5'- cCCAGGUaG-CCGGGGGU-CCUgCAGa -3'
miRNA:   3'- cGGUCCAaCgGGUCCCCGuGGAgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.