miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 124452 0.66 0.686169
Target:  5'- uCCAGcgUGUCCgugGGGGGCGCCUcgcccCCGGg -3'
miRNA:   3'- cGGUCcaACGGG---UCCCCGUGGA-----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 122083 0.66 0.715083
Target:  5'- uGCUGGG-UGCuCCAGGGaacaGCCUCCu- -3'
miRNA:   3'- -CGGUCCaACG-GGUCCCcg--UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 53335 0.66 0.734045
Target:  5'- cGCUcguGGGU--CUCGGGGGCGCUcuugUCCAGc -3'
miRNA:   3'- -CGG---UCCAacGGGUCCCCGUGG----AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 133662 0.66 0.715083
Target:  5'- aCCGGGUUGCgCGGGcacucCACCgCCAGg -3'
miRNA:   3'- cGGUCCAACGgGUCCcc---GUGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 157402 0.66 0.715083
Target:  5'- cCCAGGUcgGCCaacucgaAGGGGCGCgcggCUCCc- -3'
miRNA:   3'- cGGUCCAa-CGGg------UCCCCGUG----GAGGuc -5'
4029 5' -61.3 NC_001650.1 + 101927 0.66 0.724601
Target:  5'- gGgCGGGUgggGCgagCgGGGGGCucccuCCUCCGGg -3'
miRNA:   3'- -CgGUCCAa--CG---GgUCCCCGu----GGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 43973 0.66 0.723652
Target:  5'- gGCCGGGcugaGCCCAGGguuacaugcucccGGCGgCUUUAGg -3'
miRNA:   3'- -CGGUCCaa--CGGGUCC-------------CCGUgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 138860 0.66 0.737801
Target:  5'- gGCCGGGUUggguuugggaaccgaGCuCCGGGGGCgaGCUgcuaCAGg -3'
miRNA:   3'- -CGGUCCAA---------------CG-GGUCCCCG--UGGag--GUC- -5'
4029 5' -61.3 NC_001650.1 + 63699 0.66 0.724601
Target:  5'- cGCCGGc--GCCCAGaGGCACCUgCu- -3'
miRNA:   3'- -CGGUCcaaCGGGUCcCCGUGGAgGuc -5'
4029 5' -61.3 NC_001650.1 + 51669 0.66 0.695859
Target:  5'- aCCGGGggcgcgucGCCCgGGGGGCGCgCguugcCCAGg -3'
miRNA:   3'- cGGUCCaa------CGGG-UCCCCGUG-Ga----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 98626 0.67 0.676438
Target:  5'- -gCGGGUcauagugcacugUGUUguGGGGCACCUCguGu -3'
miRNA:   3'- cgGUCCA------------ACGGguCCCCGUGGAGguC- -5'
4029 5' -61.3 NC_001650.1 + 112155 0.67 0.666674
Target:  5'- gGCCAGccaccUUGaCCAGGGcCugCUCCAGg -3'
miRNA:   3'- -CGGUCc----AACgGGUCCCcGugGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 81557 0.67 0.656884
Target:  5'- uCCGGGUggucagGUUgAGGGGCcCCUCCu- -3'
miRNA:   3'- cGGUCCAa-----CGGgUCCCCGuGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 139031 0.67 0.676438
Target:  5'- cCCGGGUaucGCUUguGGGGGUACCcggcUCCGGg -3'
miRNA:   3'- cGGUCCAa--CGGG--UCCCCGUGG----AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 87975 0.67 0.676438
Target:  5'- cCCAGGaUGaccagcgaCCCGGGGGCGC--CCAGg -3'
miRNA:   3'- cGGUCCaAC--------GGGUCCCCGUGgaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 117753 0.67 0.631363
Target:  5'- uCCAGGUcggGUUCAGGGGCGacagccggucggcgcCCUCCc- -3'
miRNA:   3'- cGGUCCAa--CGGGUCCCCGU---------------GGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 92409 0.67 0.654924
Target:  5'- gGCCGaGUccacgGCCCAGGGGCucaagaagcaggUCUCCGGc -3'
miRNA:   3'- -CGGUcCAa----CGGGUCCCCGu-----------GGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 89263 0.67 0.636274
Target:  5'- aCgAGGgccugUGCCCAGaGGGCaggcacgACCUCCuGa -3'
miRNA:   3'- cGgUCCa----ACGGGUC-CCCG-------UGGAGGuC- -5'
4029 5' -61.3 NC_001650.1 + 91139 0.67 0.637257
Target:  5'- aCUGGGUccucccgGCCgCGGGGGCugCUgCGGa -3'
miRNA:   3'- cGGUCCAa------CGG-GUCCCCGugGAgGUC- -5'
4029 5' -61.3 NC_001650.1 + 135824 0.67 0.676438
Target:  5'- --gGGGUUGCCgCA-GGGCACCgUCCu- -3'
miRNA:   3'- cggUCCAACGG-GUcCCCGUGG-AGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.