miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 134931 0.73 0.343034
Target:  5'- gGCCAGcuccagGCCCGGGGGCAgCUCg-- -3'
miRNA:   3'- -CGGUCcaa---CGGGUCCCCGUgGAGguc -5'
4029 5' -61.3 NC_001650.1 + 21542 0.72 0.372639
Target:  5'- gGCCGcggcugcGGUgGaCCCGGGGGuCGCCUCCGa -3'
miRNA:   3'- -CGGU-------CCAaC-GGGUCCCC-GUGGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 155197 0.72 0.389285
Target:  5'- cCCAGGgcGUCCAGGGaGUA-CUCCAGc -3'
miRNA:   3'- cGGUCCaaCGGGUCCC-CGUgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 64284 0.71 0.405584
Target:  5'- -gCAGGa-GCCCcGGGGCACCUUCGu -3'
miRNA:   3'- cgGUCCaaCGGGuCCCCGUGGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 94323 0.71 0.405584
Target:  5'- gGUCAGGgugagGCUCAGGGcCGCgUCCAGg -3'
miRNA:   3'- -CGGUCCaa---CGGGUCCCcGUGgAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 23008 0.71 0.413892
Target:  5'- uGCCGGGUcaGCCUgcucGGGCACCUcgCCAGg -3'
miRNA:   3'- -CGGUCCAa-CGGGuc--CCCGUGGA--GGUC- -5'
4029 5' -61.3 NC_001650.1 + 26615 0.71 0.433394
Target:  5'- uGCCcaucuGGGUucucuguUGCCCAGGGGCGgcgcggugcuguaccUCUCCAa -3'
miRNA:   3'- -CGG-----UCCA-------ACGGGUCCCCGU---------------GGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 134899 0.71 0.439435
Target:  5'- gGUCAGGUcGCCCAGGuGCuucuuCCUCCu- -3'
miRNA:   3'- -CGGUCCAaCGGGUCCcCGu----GGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 48426 0.7 0.447271
Target:  5'- cGCCAuGGUggggGCCCuGGccuuucagagcauGGCgGCCUCCAGg -3'
miRNA:   3'- -CGGU-CCAa---CGGGuCC-------------CCG-UGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 81515 0.7 0.456954
Target:  5'- -aCAGGUUGCUCAGGauCuCCUCCAGu -3'
miRNA:   3'- cgGUCCAACGGGUCCccGuGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 64033 0.7 0.456954
Target:  5'- --gAGGUgacGCCCAGGGGCGaCUCUGGc -3'
miRNA:   3'- cggUCCAa--CGGGUCCCCGUgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 133289 0.7 0.463173
Target:  5'- cGCCgagagaaggggaggGGGcUGCCCAGGaGGCGCCgggCgAGg -3'
miRNA:   3'- -CGG--------------UCCaACGGGUCC-CCGUGGa--GgUC- -5'
4029 5' -61.3 NC_001650.1 + 133403 0.7 0.465853
Target:  5'- cGCCGGGgccgcggUGCCCGagaagaagaccuGGGGCugCUCa-- -3'
miRNA:   3'- -CGGUCCa------ACGGGU------------CCCCGugGAGguc -5'
4029 5' -61.3 NC_001650.1 + 16436 0.7 0.465853
Target:  5'- aGCCAauGGggGCCCGGGGGUggGCCcaaCCGc -3'
miRNA:   3'- -CGGU--CCaaCGGGUCCCCG--UGGa--GGUc -5'
4029 5' -61.3 NC_001650.1 + 157270 0.7 0.465853
Target:  5'- cUCGGGgcuguaGCCCaugcgccugGGGGGCACCUCCc- -3'
miRNA:   3'- cGGUCCaa----CGGG---------UCCCCGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 183143 0.7 0.465853
Target:  5'- aGCCAauGGggGCCCGGGGGUggGCCcaaCCGc -3'
miRNA:   3'- -CGGU--CCaaCGGGUCCCCG--UGGa--GGUc -5'
4029 5' -61.3 NC_001650.1 + 106388 0.7 0.474841
Target:  5'- uCCAGGUUGCCCgccucgcccaGGGaGGCcagcagGCCgUCCAGc -3'
miRNA:   3'- cGGUCCAACGGG----------UCC-CCG------UGG-AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 120184 0.7 0.474841
Target:  5'- cGCCAGaGUcGCCCcuGGGCgucACCUCCu- -3'
miRNA:   3'- -CGGUC-CAaCGGGucCCCG---UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 117862 0.7 0.47846
Target:  5'- gGCCAGGUUGCagguggaggugaacuCguGGGGCugCUgCAc -3'
miRNA:   3'- -CGGUCCAACG---------------GguCCCCGugGAgGUc -5'
4029 5' -61.3 NC_001650.1 + 129620 0.7 0.483914
Target:  5'- aGCCAGGUccaaaaUCCAGGGGUAgCgugCCGGg -3'
miRNA:   3'- -CGGUCCAac----GGGUCCCCGUgGa--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.