miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 158660 0.66 0.704537
Target:  5'- gGCUAcGGggGUCCAGGuGGCuaaccugACCUCgGGg -3'
miRNA:   3'- -CGGU-CCaaCGGGUCC-CCG-------UGGAGgUC- -5'
4029 5' -61.3 NC_001650.1 + 132191 0.66 0.704537
Target:  5'- aCCGGGUUcgaggugGCCguGGGGUGCCUgCu- -3'
miRNA:   3'- cGGUCCAA-------CGGguCCCCGUGGAgGuc -5'
4029 5' -61.3 NC_001650.1 + 137701 0.66 0.695859
Target:  5'- aGCCAGGgcGCCCGGucGCcGCCgccccgacgCCGGg -3'
miRNA:   3'- -CGGUCCaaCGGGUCccCG-UGGa--------GGUC- -5'
4029 5' -61.3 NC_001650.1 + 74869 0.66 0.695859
Target:  5'- uCCGGGagGCCC--GGGCAgaUCUCCAGc -3'
miRNA:   3'- cGGUCCaaCGGGucCCCGU--GGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 51669 0.66 0.695859
Target:  5'- aCCGGGggcgcgucGCCCgGGGGGCGCgCguugcCCAGg -3'
miRNA:   3'- cGGUCCaa------CGGG-UCCCCGUG-Ga----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 145766 0.66 0.695859
Target:  5'- cGCCGGGU--UCCAGGcGGUgaggacgaGCCUCCu- -3'
miRNA:   3'- -CGGUCCAacGGGUCC-CCG--------UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 155719 0.66 0.686169
Target:  5'- aGCCGGaGUUGaCCAGGGcgugcaGCGCggCCAGg -3'
miRNA:   3'- -CGGUC-CAACgGGUCCC------CGUGgaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 66866 0.66 0.686169
Target:  5'- gGCCGcGGgagGCgCCGGGGGCgggggcgaGCCgggggCCGGg -3'
miRNA:   3'- -CGGU-CCaa-CG-GGUCCCCG--------UGGa----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 124452 0.66 0.686169
Target:  5'- uCCAGcgUGUCCgugGGGGGCGCCUcgcccCCGGg -3'
miRNA:   3'- cGGUCcaACGGG---UCCCCGUGGA-----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 35284 0.66 0.686169
Target:  5'- uGCUcGGUUGCCCGGGaGacgGgCUCCAGu -3'
miRNA:   3'- -CGGuCCAACGGGUCCcCg--UgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 98626 0.67 0.676438
Target:  5'- -gCGGGUcauagugcacugUGUUguGGGGCACCUCguGu -3'
miRNA:   3'- cgGUCCA------------ACGGguCCCCGUGGAGguC- -5'
4029 5' -61.3 NC_001650.1 + 135824 0.67 0.676438
Target:  5'- --gGGGUUGCCgCA-GGGCACCgUCCu- -3'
miRNA:   3'- cggUCCAACGG-GUcCCCGUGG-AGGuc -5'
4029 5' -61.3 NC_001650.1 + 87975 0.67 0.676438
Target:  5'- cCCAGGaUGaccagcgaCCCGGGGGCGC--CCAGg -3'
miRNA:   3'- cGGUCCaAC--------GGGUCCCCGUGgaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 139031 0.67 0.676438
Target:  5'- cCCGGGUaucGCUUguGGGGGUACCcggcUCCGGg -3'
miRNA:   3'- cGGUCCAa--CGGG--UCCCCGUGG----AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 66924 0.67 0.676438
Target:  5'- cGCCcucaUGCCCAccGcGGGCACCUCcCAGc -3'
miRNA:   3'- -CGGuccaACGGGU--C-CCCGUGGAG-GUC- -5'
4029 5' -61.3 NC_001650.1 + 69960 0.67 0.666674
Target:  5'- aCCGGGaUG-CUGGGGGCGgCCUCCu- -3'
miRNA:   3'- cGGUCCaACgGGUCCCCGU-GGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 112155 0.67 0.666674
Target:  5'- gGCCAGccaccUUGaCCAGGGcCugCUCCAGg -3'
miRNA:   3'- -CGGUCc----AACgGGUCCCcGugGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 129564 0.67 0.656884
Target:  5'- aGCCAGGUccaaaaUCCAGGGGUcCaaaaUCCGGg -3'
miRNA:   3'- -CGGUCCAac----GGGUCCCCGuGg---AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 129662 0.67 0.656884
Target:  5'- aGCCAGGUccaaaaUCCAGGGGUcCaaaaUCCGGg -3'
miRNA:   3'- -CGGUCCAac----GGGUCCCCGuGg---AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 81557 0.67 0.656884
Target:  5'- uCCGGGUggucagGUUgAGGGGCcCCUCCu- -3'
miRNA:   3'- cGGUCCAa-----CGGgUCCCCGuGGAGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.