miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 92409 0.67 0.654924
Target:  5'- gGCCGaGUccacgGCCCAGGGGCucaagaagcaggUCUCCGGc -3'
miRNA:   3'- -CGGUcCAa----CGGGUCCCCGu-----------GGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 63922 0.67 0.637257
Target:  5'- cGCUGGGcgagccUGUCCAGGGaCGCCUgCGGg -3'
miRNA:   3'- -CGGUCCa-----ACGGGUCCCcGUGGAgGUC- -5'
4029 5' -61.3 NC_001650.1 + 91139 0.67 0.637257
Target:  5'- aCUGGGUccucccgGCCgCGGGGGCugCUgCGGa -3'
miRNA:   3'- cGGUCCAa------CGG-GUCCCCGugGAgGUC- -5'
4029 5' -61.3 NC_001650.1 + 89263 0.67 0.636274
Target:  5'- aCgAGGgccugUGCCCAGaGGGCaggcacgACCUCCuGa -3'
miRNA:   3'- cGgUCCa----ACGGGUC-CCCG-------UGGAGGuC- -5'
4029 5' -61.3 NC_001650.1 + 117753 0.67 0.631363
Target:  5'- uCCAGGUcggGUUCAGGGGCGacagccggucggcgcCCUCCc- -3'
miRNA:   3'- cGGUCCAa--CGGGUCCCCGU---------------GGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 62984 0.67 0.626451
Target:  5'- cCCAGGUU-CaCCAGGaacuugaGGCACCgcUCCAGg -3'
miRNA:   3'- cGGUCCAAcG-GGUCC-------CCGUGG--AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 53418 0.68 0.617614
Target:  5'- cGCCAGGU---CCGGGGcguccaGCGCCUCCc- -3'
miRNA:   3'- -CGGUCCAacgGGUCCC------CGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 147675 0.68 0.617614
Target:  5'- gGCCGGGagccGCUCugGGGGGUACCUgcUCGGg -3'
miRNA:   3'- -CGGUCCaa--CGGG--UCCCCGUGGA--GGUC- -5'
4029 5' -61.3 NC_001650.1 + 60853 0.68 0.61467
Target:  5'- cGCCcgucGGUguaaaaguccucggUGCCgAGGccaGCACCUCCAGg -3'
miRNA:   3'- -CGGu---CCA--------------ACGGgUCCc--CGUGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 181085 0.68 0.613689
Target:  5'- aGCCGGGUggccgucUGCgucaucuguugCCAGGGGCcagaauccaauaugGCCUCCc- -3'
miRNA:   3'- -CGGUCCA-------ACG-----------GGUCCCCG--------------UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 14378 0.68 0.613689
Target:  5'- aGCCGGGUggccgucUGCgucaucuguugCCAGGGGCcagaauccaauaugGCCUCCc- -3'
miRNA:   3'- -CGGUCCA-------ACG-----------GGUCCCCG--------------UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 83763 0.68 0.607805
Target:  5'- gGUCAGGUacCCCGGGuacGCGCCgUCCGGg -3'
miRNA:   3'- -CGGUCCAacGGGUCCc--CGUGG-AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 160874 0.68 0.607805
Target:  5'- gGCCAcGGgcagGUCCAGGGGCcCCacgCCGc -3'
miRNA:   3'- -CGGU-CCaa--CGGGUCCCCGuGGa--GGUc -5'
4029 5' -61.3 NC_001650.1 + 40296 0.68 0.607805
Target:  5'- aCCAGGcaccUGCCC-GGGGCgaucucguggACgUCCAGg -3'
miRNA:   3'- cGGUCCa---ACGGGuCCCCG----------UGgAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 50242 0.68 0.598012
Target:  5'- gGCgGGGaccaUGCgcgaCAGGGGCGCCUCUc- -3'
miRNA:   3'- -CGgUCCa---ACGg---GUCCCCGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 62147 0.68 0.568797
Target:  5'- gGCCAGG--GUCaGGGGGCGCCUgaugugggCCAGc -3'
miRNA:   3'- -CGGUCCaaCGGgUCCCCGUGGA--------GGUC- -5'
4029 5' -61.3 NC_001650.1 + 49447 0.69 0.559134
Target:  5'- cGUgAGGUcUGCCUcuggggcaucaGGGGGCgccGCCUCCAc -3'
miRNA:   3'- -CGgUCCA-ACGGG-----------UCCCCG---UGGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 165735 0.69 0.559134
Target:  5'- cUCGGGggGCCC-GGGGCGgCUCUuAGg -3'
miRNA:   3'- cGGUCCaaCGGGuCCCCGUgGAGG-UC- -5'
4029 5' -61.3 NC_001650.1 + 104818 0.69 0.549516
Target:  5'- -aCGGGgcgccGCCCGGGGGCGCgaCgGGg -3'
miRNA:   3'- cgGUCCaa---CGGGUCCCCGUGgaGgUC- -5'
4029 5' -61.3 NC_001650.1 + 68811 0.69 0.545684
Target:  5'- gGCCGGG--GCCCucgcucgaggggcGGGGCGCCUCgGa -3'
miRNA:   3'- -CGGUCCaaCGGGu------------CCCCGUGGAGgUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.