miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 48426 0.7 0.447271
Target:  5'- cGCCAuGGUggggGCCCuGGccuuucagagcauGGCgGCCUCCAGg -3'
miRNA:   3'- -CGGU-CCAa---CGGGuCC-------------CCG-UGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 49447 0.69 0.559134
Target:  5'- cGUgAGGUcUGCCUcuggggcaucaGGGGGCgccGCCUCCAc -3'
miRNA:   3'- -CGgUCCA-ACGGG-----------UCCCCG---UGGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 50242 0.68 0.598012
Target:  5'- gGCgGGGaccaUGCgcgaCAGGGGCGCCUCUc- -3'
miRNA:   3'- -CGgUCCa---ACGg---GUCCCCGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 50291 0.73 0.32144
Target:  5'- uGCCGGGgu-CUgGGGGGCGCCcCCAGc -3'
miRNA:   3'- -CGGUCCaacGGgUCCCCGUGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 50329 0.77 0.176076
Target:  5'- cGCCGcGGU--CCCAGGGGCGgCCUCUAGa -3'
miRNA:   3'- -CGGU-CCAacGGGUCCCCGU-GGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 51669 0.66 0.695859
Target:  5'- aCCGGGggcgcgucGCCCgGGGGGCGCgCguugcCCAGg -3'
miRNA:   3'- cGGUCCaa------CGGG-UCCCCGUG-Ga----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 52620 0.66 0.723652
Target:  5'- gGCCAcug-GCCCGGGGGUccucggcACCUcgcgCCAGa -3'
miRNA:   3'- -CGGUccaaCGGGUCCCCG-------UGGA----GGUC- -5'
4029 5' -61.3 NC_001650.1 + 53089 0.75 0.256888
Target:  5'- aGCCuGGgcGCCagucuCAGGGGCGCC-CCGGa -3'
miRNA:   3'- -CGGuCCaaCGG-----GUCCCCGUGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 53335 0.66 0.734045
Target:  5'- cGCUcguGGGU--CUCGGGGGCGCUcuugUCCAGc -3'
miRNA:   3'- -CGG---UCCAacGGGUCCCCGUGG----AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 53418 0.68 0.617614
Target:  5'- cGCCAGGU---CCGGGGcguccaGCGCCUCCc- -3'
miRNA:   3'- -CGGUCCAacgGGUCCC------CGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 54249 0.74 0.275063
Target:  5'- cUCAGGgcccGCgCCAcGGGCGCCUCCAGg -3'
miRNA:   3'- cGGUCCaa--CG-GGUcCCCGUGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 58769 0.66 0.724601
Target:  5'- cGUgAGGUgcaGcCCCAGGGuccaucccacguGCGCCUCCuGa -3'
miRNA:   3'- -CGgUCCAa--C-GGGUCCC------------CGUGGAGGuC- -5'
4029 5' -61.3 NC_001650.1 + 60853 0.68 0.61467
Target:  5'- cGCCcgucGGUguaaaaguccucggUGCCgAGGccaGCACCUCCAGg -3'
miRNA:   3'- -CGGu---CCA--------------ACGGgUCCc--CGUGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 62053 0.76 0.218304
Target:  5'- -gCAGGUUGCCCAGGG-CGCCgCCGu -3'
miRNA:   3'- cgGUCCAACGGGUCCCcGUGGaGGUc -5'
4029 5' -61.3 NC_001650.1 + 62147 0.68 0.568797
Target:  5'- gGCCAGG--GUCaGGGGGCGCCUgaugugggCCAGc -3'
miRNA:   3'- -CGGUCCaaCGGgUCCCCGUGGA--------GGUC- -5'
4029 5' -61.3 NC_001650.1 + 62567 0.69 0.520996
Target:  5'- cGCCAGGUcGUCCucGGGGgGCCUgggCAGg -3'
miRNA:   3'- -CGGUCCAaCGGGu-CCCCgUGGAg--GUC- -5'
4029 5' -61.3 NC_001650.1 + 62874 0.74 0.300878
Target:  5'- aGCCAGGggGCuccggagcacCCGGGGGCgcgACCcCCAGa -3'
miRNA:   3'- -CGGUCCaaCG----------GGUCCCCG---UGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 62984 0.67 0.626451
Target:  5'- cCCAGGUU-CaCCAGGaacuugaGGCACCgcUCCAGg -3'
miRNA:   3'- cGGUCCAAcG-GGUCC-------CCGUGG--AGGUC- -5'
4029 5' -61.3 NC_001650.1 + 63699 0.66 0.724601
Target:  5'- cGCCGGc--GCCCAGaGGCACCUgCu- -3'
miRNA:   3'- -CGGUCcaaCGGGUCcCCGUGGAgGuc -5'
4029 5' -61.3 NC_001650.1 + 63922 0.67 0.637257
Target:  5'- cGCUGGGcgagccUGUCCAGGGaCGCCUgCGGg -3'
miRNA:   3'- -CGGUCCa-----ACGGGUCCCcGUGGAgGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.