miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4029 5' -61.3 NC_001650.1 + 50242 0.68 0.598012
Target:  5'- gGCgGGGaccaUGCgcgaCAGGGGCGCCUCUc- -3'
miRNA:   3'- -CGgUCCa---ACGg---GUCCCCGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 171498 0.74 0.300878
Target:  5'- gGCCGGG--GCUCgAGGGGUagGCCUCCGGu -3'
miRNA:   3'- -CGGUCCaaCGGG-UCCCCG--UGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 62874 0.74 0.300878
Target:  5'- aGCCAGGggGCuccggagcacCCGGGGGCgcgACCcCCAGa -3'
miRNA:   3'- -CGGUCCaaCG----------GGUCCCCG---UGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 4791 0.74 0.300878
Target:  5'- gGCCGGG--GCUCgAGGGGUagGCCUCCGGu -3'
miRNA:   3'- -CGGUCCaaCGGG-UCCCCG--UGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 158274 0.74 0.281346
Target:  5'- gGCCuGGaUGCCCAGGGGCAuggcguugUCgggCCGGg -3'
miRNA:   3'- -CGGuCCaACGGGUCCCCGU--------GGa--GGUC- -5'
4029 5' -61.3 NC_001650.1 + 69127 0.76 0.212712
Target:  5'- aCCAGGUUcucggcuaucuugGCCCucAGGGGCgcgagcGCCUCCAGg -3'
miRNA:   3'- cGGUCCAA-------------CGGG--UCCCCG------UGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 26730 0.78 0.159751
Target:  5'- cGCCGGGcccgGCCUggAGGGGCugugcgccGCCUCCAGg -3'
miRNA:   3'- -CGGUCCaa--CGGG--UCCCCG--------UGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 99374 0.8 0.124769
Target:  5'- aCCAGGaaacUGUCCAGGGcGCGCCUCCAc -3'
miRNA:   3'- cGGUCCa---ACGGGUCCC-CGUGGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 156101 1.09 0.001149
Target:  5'- gGCCAGGUUGCCCAGGGGCACCUCCAGc -3'
miRNA:   3'- -CGGUCCAACGGGUCCCCGUGGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 21542 0.72 0.372639
Target:  5'- gGCCGcggcugcGGUgGaCCCGGGGGuCGCCUCCGa -3'
miRNA:   3'- -CGGU-------CCAaC-GGGUCCCC-GUGGAGGUc -5'
4029 5' -61.3 NC_001650.1 + 155197 0.72 0.389285
Target:  5'- cCCAGGgcGUCCAGGGaGUA-CUCCAGc -3'
miRNA:   3'- cGGUCCaaCGGGUCCC-CGUgGAGGUC- -5'
4029 5' -61.3 NC_001650.1 + 23008 0.71 0.413892
Target:  5'- uGCCGGGUcaGCCUgcucGGGCACCUcgCCAGg -3'
miRNA:   3'- -CGGUCCAa-CGGGuc--CCCGUGGA--GGUC- -5'
4029 5' -61.3 NC_001650.1 + 165735 0.69 0.559134
Target:  5'- cUCGGGggGCCC-GGGGCGgCUCUuAGg -3'
miRNA:   3'- cGGUCCaaCGGGuCCCCGUgGAGG-UC- -5'
4029 5' -61.3 NC_001650.1 + 68811 0.69 0.545684
Target:  5'- gGCCGGG--GCCCucgcucgaggggcGGGGCGCCUCgGa -3'
miRNA:   3'- -CGGUCCaaCGGGu------------CCCCGUGGAGgUc -5'
4029 5' -61.3 NC_001650.1 + 111192 0.69 0.502305
Target:  5'- cCCAGGcgGCUCAGGcGGCccgcGCCcCCAGg -3'
miRNA:   3'- cGGUCCaaCGGGUCC-CCG----UGGaGGUC- -5'
4029 5' -61.3 NC_001650.1 + 117862 0.7 0.47846
Target:  5'- gGCCAGGUUGCagguggaggugaacuCguGGGGCugCUgCAc -3'
miRNA:   3'- -CGGUCCAACG---------------GguCCCCGugGAgGUc -5'
4029 5' -61.3 NC_001650.1 + 120184 0.7 0.474841
Target:  5'- cGCCAGaGUcGCCCcuGGGCgucACCUCCu- -3'
miRNA:   3'- -CGGUC-CAaCGGGucCCCG---UGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 157270 0.7 0.465853
Target:  5'- cUCGGGgcuguaGCCCaugcgccugGGGGGCACCUCCc- -3'
miRNA:   3'- cGGUCCaa----CGGG---------UCCCCGUGGAGGuc -5'
4029 5' -61.3 NC_001650.1 + 133289 0.7 0.463173
Target:  5'- cGCCgagagaaggggaggGGGcUGCCCAGGaGGCGCCgggCgAGg -3'
miRNA:   3'- -CGG--------------UCCaACGGGUCC-CCGUGGa--GgUC- -5'
4029 5' -61.3 NC_001650.1 + 134899 0.71 0.439435
Target:  5'- gGUCAGGUcGCCCAGGuGCuucuuCCUCCu- -3'
miRNA:   3'- -CGGUCCAaCGGGUCCcCGu----GGAGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.