miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4030 3' -53.5 NC_001650.1 + 23755 0.66 0.979987
Target:  5'- cGCGCGGggGGCGgagacccgcccgaggGGGGCGcuGACAUc -3'
miRNA:   3'- -CGUGCCa-CCGUa--------------UCCCGCacUUGUAc -5'
4030 3' -53.5 NC_001650.1 + 67963 0.66 0.974191
Target:  5'- uGCACGGgcgGGUGUccgaggccaagaccAGGGCGgaGAAgGUGu -3'
miRNA:   3'- -CGUGCCa--CCGUA--------------UCCCGCa-CUUgUAC- -5'
4030 3' -53.5 NC_001650.1 + 107281 0.66 0.974191
Target:  5'- -gGCGGUGGUcucuaugaaaaacaGcgaUAGGuGCGUGGugGUGg -3'
miRNA:   3'- cgUGCCACCG--------------U---AUCC-CGCACUugUAC- -5'
4030 3' -53.5 NC_001650.1 + 129981 0.66 0.972291
Target:  5'- gGCGCGGgcccugaGGCugcugAGGGCGgcgcgGGACGa- -3'
miRNA:   3'- -CGUGCCa------CCGua---UCCCGCa----CUUGUac -5'
4030 3' -53.5 NC_001650.1 + 78523 0.66 0.972291
Target:  5'- gGCACGuagGGCcgcaccaggAUAGGGUacagguugGUGAGCGUGa -3'
miRNA:   3'- -CGUGCca-CCG---------UAUCCCG--------CACUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 98466 0.66 0.969405
Target:  5'- -gAgGGgGGCGgAGGGUGUGGACGa- -3'
miRNA:   3'- cgUgCCaCCGUaUCCCGCACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 29039 0.66 0.969405
Target:  5'- cGCACGcccucggGGCGcGGGGgGUGGccgACGUGg -3'
miRNA:   3'- -CGUGCca-----CCGUaUCCCgCACU---UGUAC- -5'
4030 3' -53.5 NC_001650.1 + 85393 0.67 0.966312
Target:  5'- uGCGCcaacGUGaGCGUGGGGCG-GGAUAa- -3'
miRNA:   3'- -CGUGc---CAC-CGUAUCCCGCaCUUGUac -5'
4030 3' -53.5 NC_001650.1 + 63965 0.67 0.963004
Target:  5'- gGCAUGGUgGGCuauuggGGGGCGaGGGCuUGc -3'
miRNA:   3'- -CGUGCCA-CCGua----UCCCGCaCUUGuAC- -5'
4030 3' -53.5 NC_001650.1 + 163233 0.67 0.962661
Target:  5'- -gGCGGUGG-AUGGGGUggaugggGUGAAUcgGg -3'
miRNA:   3'- cgUGCCACCgUAUCCCG-------CACUUGuaC- -5'
4030 3' -53.5 NC_001650.1 + 31010 0.67 0.959476
Target:  5'- aGCAgGGccUGGC-UGGGGCGggGGGCGc- -3'
miRNA:   3'- -CGUgCC--ACCGuAUCCCGCa-CUUGUac -5'
4030 3' -53.5 NC_001650.1 + 28041 0.67 0.959476
Target:  5'- gGCucuCGGaggcgGGCAUcugcgAGGGCGgggaGGACGUGg -3'
miRNA:   3'- -CGu--GCCa----CCGUA-----UCCCGCa---CUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 126205 0.67 0.955723
Target:  5'- cCGCGGcggGGCGgcGGGCGagGAGCGa- -3'
miRNA:   3'- cGUGCCa--CCGUauCCCGCa-CUUGUac -5'
4030 3' -53.5 NC_001650.1 + 159604 0.67 0.955723
Target:  5'- aCAUGGcGGCG-GGGGCgGUGGGCAa- -3'
miRNA:   3'- cGUGCCaCCGUaUCCCG-CACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 150979 0.67 0.955723
Target:  5'- -gGCGGUGGCGgcggUGGuGGCGgcGGAgGUGg -3'
miRNA:   3'- cgUGCCACCGU----AUC-CCGCa-CUUgUAC- -5'
4030 3' -53.5 NC_001650.1 + 42552 0.67 0.955723
Target:  5'- cGCACGGagGGCcucGGGGCcUGGGgGUGu -3'
miRNA:   3'- -CGUGCCa-CCGua-UCCCGcACUUgUAC- -5'
4030 3' -53.5 NC_001650.1 + 124074 0.67 0.954552
Target:  5'- cGCGauccaGGUGGaCGUgucagaggccgacgGGGGCG-GAGCGUGc -3'
miRNA:   3'- -CGUg----CCACC-GUA--------------UCCCGCaCUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 122128 0.68 0.947526
Target:  5'- gGCGgGGUcGGCucgGGGGCGgGGGCGg- -3'
miRNA:   3'- -CGUgCCA-CCGua-UCCCGCaCUUGUac -5'
4030 3' -53.5 NC_001650.1 + 51467 0.68 0.943074
Target:  5'- uCACGGUGGUGggaGGGGUGacccUGAACGc- -3'
miRNA:   3'- cGUGCCACCGUa--UCCCGC----ACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 8927 0.68 0.943074
Target:  5'- aUugGGguUGGCcgAGGGgG-GAGCGUGg -3'
miRNA:   3'- cGugCC--ACCGuaUCCCgCaCUUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.