miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4030 3' -53.5 NC_001650.1 + 8927 0.68 0.943074
Target:  5'- aUugGGguUGGCcgAGGGgG-GAGCGUGg -3'
miRNA:   3'- cGugCC--ACCGuaUCCCgCaCUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 14624 0.68 0.928279
Target:  5'- aUAgGGUGGgcUAGGGgGUGGGCAUa -3'
miRNA:   3'- cGUgCCACCguAUCCCgCACUUGUAc -5'
4030 3' -53.5 NC_001650.1 + 15326 0.71 0.814201
Target:  5'- uGCACGGggGGCAgaggAGGuaaGUGUGGugAUGg -3'
miRNA:   3'- -CGUGCCa-CCGUa---UCC---CGCACUugUAC- -5'
4030 3' -53.5 NC_001650.1 + 23755 0.66 0.979987
Target:  5'- cGCGCGGggGGCGgagacccgcccgaggGGGGCGcuGACAUc -3'
miRNA:   3'- -CGUGCCa-CCGUa--------------UCCCGCacUUGUAc -5'
4030 3' -53.5 NC_001650.1 + 25042 0.69 0.917206
Target:  5'- -gACGGUGGUGUucAGGGU--GGACGUGg -3'
miRNA:   3'- cgUGCCACCGUA--UCCCGcaCUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 28041 0.67 0.959476
Target:  5'- gGCucuCGGaggcgGGCAUcugcgAGGGCGgggaGGACGUGg -3'
miRNA:   3'- -CGu--GCCa----CCGUA-----UCCCGCa---CUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 28574 0.68 0.922864
Target:  5'- gGCugGG-GGCGUucgcGGGGCucgugGUGAGCGg- -3'
miRNA:   3'- -CGugCCaCCGUA----UCCCG-----CACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 29039 0.66 0.969405
Target:  5'- cGCACGcccucggGGCGcGGGGgGUGGccgACGUGg -3'
miRNA:   3'- -CGUGCca-----CCGUaUCCCgCACU---UGUAC- -5'
4030 3' -53.5 NC_001650.1 + 31010 0.67 0.959476
Target:  5'- aGCAgGGccUGGC-UGGGGCGggGGGCGc- -3'
miRNA:   3'- -CGUgCC--ACCGuAUCCCGCa-CUUGUac -5'
4030 3' -53.5 NC_001650.1 + 35270 0.7 0.885336
Target:  5'- aGCGCGGgugGGC--GGGGCGggccggGGACGg- -3'
miRNA:   3'- -CGUGCCa--CCGuaUCCCGCa-----CUUGUac -5'
4030 3' -53.5 NC_001650.1 + 36416 0.77 0.516296
Target:  5'- aCACGGUGGCcgGGGaguGCGUGGGCGc- -3'
miRNA:   3'- cGUGCCACCGuaUCC---CGCACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 38059 0.68 0.938384
Target:  5'- cGCAgGGgGGaCAggacGGGCGUGGGCAc- -3'
miRNA:   3'- -CGUgCCaCC-GUau--CCCGCACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 42552 0.67 0.955723
Target:  5'- cGCACGGagGGCcucGGGGCcUGGGgGUGu -3'
miRNA:   3'- -CGUGCCa-CCGua-UCCCGcACUUgUAC- -5'
4030 3' -53.5 NC_001650.1 + 51467 0.68 0.943074
Target:  5'- uCACGGUGGUGggaGGGGUGacccUGAACGc- -3'
miRNA:   3'- cGUGCCACCGUa--UCCCGC----ACUUGUac -5'
4030 3' -53.5 NC_001650.1 + 63498 0.74 0.679231
Target:  5'- cCAgGGaGGCGgGGGGCGUGAAgGUGa -3'
miRNA:   3'- cGUgCCaCCGUaUCCCGCACUUgUAC- -5'
4030 3' -53.5 NC_001650.1 + 63965 0.67 0.963004
Target:  5'- gGCAUGGUgGGCuauuggGGGGCGaGGGCuUGc -3'
miRNA:   3'- -CGUGCCA-CCGua----UCCCGCaCUUGuAC- -5'
4030 3' -53.5 NC_001650.1 + 66902 0.71 0.847817
Target:  5'- gGC-CGGgGaGCAUGGGGCcgggGAGCAUGg -3'
miRNA:   3'- -CGuGCCaC-CGUAUCCCGca--CUUGUAC- -5'
4030 3' -53.5 NC_001650.1 + 67963 0.66 0.974191
Target:  5'- uGCACGGgcgGGUGUccgaggccaagaccAGGGCGgaGAAgGUGu -3'
miRNA:   3'- -CGUGCCa--CCGUA--------------UCCCGCa-CUUgUAC- -5'
4030 3' -53.5 NC_001650.1 + 69225 0.68 0.922864
Target:  5'- cGCGCGGgcgcuggaGGCcgGGGGCGaguaGAGCGg- -3'
miRNA:   3'- -CGUGCCa-------CCGuaUCCCGCa---CUUGUac -5'
4030 3' -53.5 NC_001650.1 + 75394 0.68 0.922864
Target:  5'- cCGCGGUGGCGcugGGGGCGaGAc---- -3'
miRNA:   3'- cGUGCCACCGUa--UCCCGCaCUuguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.