miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4030 5' -59.8 NC_001650.1 + 107361 0.66 0.825551
Target:  5'- cCUCCUCgCUGCagaucGCCAGCugcgCGgcgGCCCUc -3'
miRNA:   3'- -GGGGAG-GACG-----UGGUCGca--GUa--CGGGG- -5'
4030 5' -59.8 NC_001650.1 + 157266 0.66 0.825551
Target:  5'- cCCCCUCgggGCugUAGCc-CAUGCgCCu -3'
miRNA:   3'- -GGGGAGga-CGugGUCGcaGUACGgGG- -5'
4030 5' -59.8 NC_001650.1 + 146891 0.66 0.825551
Target:  5'- aCCCCgugaCCUGCucUgGGCGgua-GCCCCg -3'
miRNA:   3'- -GGGGa---GGACGu-GgUCGCaguaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 158596 0.66 0.825551
Target:  5'- aCCCUCCUGUAgagGGCGg---GCCCg -3'
miRNA:   3'- gGGGAGGACGUgg-UCGCaguaCGGGg -5'
4030 5' -59.8 NC_001650.1 + 175503 0.66 0.825551
Target:  5'- cUCCCUCUUGCuuguUguGCccgAUGCCCCu -3'
miRNA:   3'- -GGGGAGGACGu---GguCGcagUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 8796 0.66 0.825551
Target:  5'- cUCCCUCUUGCuuguUguGCccgAUGCCCCu -3'
miRNA:   3'- -GGGGAGGACGu---GguCGcagUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 21776 0.66 0.817348
Target:  5'- cCCCCUggugggggacgCCggggaggGCGCCGGCcgag-GCCCCg -3'
miRNA:   3'- -GGGGA-----------GGa------CGUGGUCGcaguaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 136466 0.66 0.817348
Target:  5'- gCCCUcgcacagggCCcGCAUCAGCccGUCAgcuucGCCCCc -3'
miRNA:   3'- gGGGA---------GGaCGUGGUCG--CAGUa----CGGGG- -5'
4030 5' -59.8 NC_001650.1 + 21946 0.66 0.817348
Target:  5'- cCUCCUUCUGCggacccccggcuACCugGGCuUCAcGCCCCu -3'
miRNA:   3'- -GGGGAGGACG------------UGG--UCGcAGUaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 106335 0.66 0.812353
Target:  5'- uCCCCgugagcUCCaGgACCAGCG-CGgccuucuccacccucUGCCCCu -3'
miRNA:   3'- -GGGG------AGGaCgUGGUCGCaGU---------------ACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 26529 0.66 0.808992
Target:  5'- gUCCCUCCUGggcaACCuccacgcggggGGCGagguguucUCGcUGCCCCu -3'
miRNA:   3'- -GGGGAGGACg---UGG-----------UCGC--------AGU-ACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 56163 0.66 0.808992
Target:  5'- gCCCCUCggGUccGCCAcCGUCucccUGCCCUc -3'
miRNA:   3'- -GGGGAGgaCG--UGGUcGCAGu---ACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 94746 0.66 0.808992
Target:  5'- aCCCCgCCUcgGCGgcCCAGCG-CAgGaCCCCg -3'
miRNA:   3'- -GGGGaGGA--CGU--GGUCGCaGUaC-GGGG- -5'
4030 5' -59.8 NC_001650.1 + 158148 0.66 0.808992
Target:  5'- aCCUCUCCcucagGCCGGCGcUCAgGCCgCCg -3'
miRNA:   3'- -GGGGAGGacg--UGGUCGC-AGUaCGG-GG- -5'
4030 5' -59.8 NC_001650.1 + 118769 0.66 0.807302
Target:  5'- cCCCCUCCUcggugcgcaGCACguaggugucauaCAuGCGcuuggccgagagCAUGCCCCg -3'
miRNA:   3'- -GGGGAGGA---------CGUG------------GU-CGCa-----------GUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 104928 0.66 0.803906
Target:  5'- -gCCUCCUuugcggccugggucaGCACCAcauCGUCGUcCCCCa -3'
miRNA:   3'- ggGGAGGA---------------CGUGGUc--GCAGUAcGGGG- -5'
4030 5' -59.8 NC_001650.1 + 144295 0.66 0.803906
Target:  5'- gCCCUcuuuaagacggacgaCCUGCACguCAGCGagaCGUGCCUg -3'
miRNA:   3'- gGGGA---------------GGACGUG--GUCGCa--GUACGGGg -5'
4030 5' -59.8 NC_001650.1 + 131813 0.66 0.800487
Target:  5'- gCCUUCCUGUucagGCCggGGCGguggCcgGCCgCCg -3'
miRNA:   3'- gGGGAGGACG----UGG--UCGCa---GuaCGG-GG- -5'
4030 5' -59.8 NC_001650.1 + 132216 0.66 0.800487
Target:  5'- -gCCUgCUGCG-CGGCGUCuccGCCCa -3'
miRNA:   3'- ggGGAgGACGUgGUCGCAGua-CGGGg -5'
4030 5' -59.8 NC_001650.1 + 126693 0.66 0.800487
Target:  5'- gCCCCagCCgGCGCCucAGCuguaUCccGCCCCg -3'
miRNA:   3'- -GGGGa-GGaCGUGG--UCGc---AGuaCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.