miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4030 5' -59.8 NC_001650.1 + 155999 0.69 0.631173
Target:  5'- gCCCC-CCUGCgugACCA-CcaCGUGCCCCu -3'
miRNA:   3'- -GGGGaGGACG---UGGUcGcaGUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 82505 0.7 0.562901
Target:  5'- aCCCCgagugCCUGUACCGcGCGcgcuUCggGCaCCCg -3'
miRNA:   3'- -GGGGa----GGACGUGGU-CGC----AGuaCG-GGG- -5'
4030 5' -59.8 NC_001650.1 + 157737 0.7 0.562901
Target:  5'- gCUgCUCCUGUACaCAuaggggggcGCGUCcgGCCCUc -3'
miRNA:   3'- -GGgGAGGACGUG-GU---------CGCAGuaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 100088 0.7 0.572568
Target:  5'- gCCUCUCCccGCACCuGCGgacgGCCUCg -3'
miRNA:   3'- -GGGGAGGa-CGUGGuCGCaguaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 79052 0.7 0.572568
Target:  5'- gCCCUCUggagaggauaGCgGCCgaGGCGUCggGCCCCg -3'
miRNA:   3'- gGGGAGGa---------CG-UGG--UCGCAGuaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 89455 0.7 0.592012
Target:  5'- -aCCUCCUGCugACCGGgGUCcUGCgCUg -3'
miRNA:   3'- ggGGAGGACG--UGGUCgCAGuACGgGG- -5'
4030 5' -59.8 NC_001650.1 + 74508 0.69 0.611565
Target:  5'- aCCCUCCU-CACC-GUG--GUGCCCCc -3'
miRNA:   3'- gGGGAGGAcGUGGuCGCagUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 157344 0.69 0.621365
Target:  5'- gCCCCUCCUGaucgCAG-GUCcUGCCCa -3'
miRNA:   3'- -GGGGAGGACgug-GUCgCAGuACGGGg -5'
4030 5' -59.8 NC_001650.1 + 35159 0.69 0.631173
Target:  5'- aCCCCag--GCGCCgcgGGgGUgGUGCCCCa -3'
miRNA:   3'- -GGGGaggaCGUGG---UCgCAgUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 78951 0.7 0.553277
Target:  5'- gUCCCUCCUGgG--GGCG-CAgaUGCCCCg -3'
miRNA:   3'- -GGGGAGGACgUggUCGCaGU--ACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 138395 0.71 0.543704
Target:  5'- uCgCCUCCUGCccaACaCAGCGUaaaaaauaaCAUGCCUCc -3'
miRNA:   3'- -GgGGAGGACG---UG-GUCGCA---------GUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 155446 0.71 0.534186
Target:  5'- cCCCCUCCgGCGgCGGCaccGUCAaagaCCCCg -3'
miRNA:   3'- -GGGGAGGaCGUgGUCG---CAGUac--GGGG- -5'
4030 5' -59.8 NC_001650.1 + 102435 0.78 0.20556
Target:  5'- gUCCCagCUGCAgCCGuGCGUCGUGCCCg -3'
miRNA:   3'- -GGGGagGACGU-GGU-CGCAGUACGGGg -5'
4030 5' -59.8 NC_001650.1 + 50860 0.74 0.35364
Target:  5'- gCCCUUUCUGCugGCgCAGCG-CAcGCCCCg -3'
miRNA:   3'- -GGGGAGGACG--UG-GUCGCaGUaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 71374 0.74 0.37671
Target:  5'- aCCCCaaccCCUGCGCCGGCGc---GCUCCa -3'
miRNA:   3'- -GGGGa---GGACGUGGUCGCaguaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 58484 0.73 0.434337
Target:  5'- gCUCUCCccGUACaCAGCGacCGUGCCCCu -3'
miRNA:   3'- gGGGAGGa-CGUG-GUCGCa-GUACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 50329 0.71 0.496755
Target:  5'- gUCCCUCCcgGCcCCGGCcuccUCGaGCCCCg -3'
miRNA:   3'- -GGGGAGGa-CGuGGUCGc---AGUaCGGGG- -5'
4030 5' -59.8 NC_001650.1 + 93515 0.71 0.506007
Target:  5'- aCCCC-CCUGUACaagAGCGgcgCGgUGCCCUg -3'
miRNA:   3'- -GGGGaGGACGUGg--UCGCa--GU-ACGGGG- -5'
4030 5' -59.8 NC_001650.1 + 122425 0.71 0.515333
Target:  5'- uCCgCCUCCggGCACCuGCG-CGU-CCCCu -3'
miRNA:   3'- -GG-GGAGGa-CGUGGuCGCaGUAcGGGG- -5'
4030 5' -59.8 NC_001650.1 + 71563 0.71 0.534186
Target:  5'- -aCCUCCUGCACCccucGGCG-CAcgaGCUCCu -3'
miRNA:   3'- ggGGAGGACGUGG----UCGCaGUa--CGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.