miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4031 3' -57.6 NC_001650.1 + 78155 0.65 0.907422
Target:  5'- aCUUGGUGGuGGuGGGCACCCgcgagucuauGGUGa -3'
miRNA:   3'- -GGACCACC-CU-CCUGUGGGacu-------CCAUc -5'
4031 3' -57.6 NC_001650.1 + 152162 0.66 0.90259
Target:  5'- uCCUGGUgauuuGGGuGGcCAUCUuacuUGGGGUGGu -3'
miRNA:   3'- -GGACCA-----CCCuCCuGUGGG----ACUCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 695 0.66 0.896351
Target:  5'- uCUUGGUGGGAaGAC-CCCUGugugcaugaggGGGUc- -3'
miRNA:   3'- -GGACCACCCUcCUGuGGGAC-----------UCCAuc -5'
4031 3' -57.6 NC_001650.1 + 167402 0.66 0.896351
Target:  5'- uCUUGGUGGGAaGAC-CCCUGugugcaugaggGGGUc- -3'
miRNA:   3'- -GGACCACCCUcCUGuGGGAC-----------UCCAuc -5'
4031 3' -57.6 NC_001650.1 + 75269 0.66 0.896351
Target:  5'- gCCUGGacac-GGACAgcugcuCCCUGAGGUGGc -3'
miRNA:   3'- -GGACCacccuCCUGU------GGGACUCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 60804 0.66 0.889895
Target:  5'- cCCUGGUGGuugcuGGcGAgGCCCUcGAGGg-- -3'
miRNA:   3'- -GGACCACCc----UC-CUgUGGGA-CUCCauc -5'
4031 3' -57.6 NC_001650.1 + 48380 0.66 0.889895
Target:  5'- cCCUGaGggacgggGGGAGGACgguGCCCUGcGGc-- -3'
miRNA:   3'- -GGAC-Ca------CCCUCCUG---UGGGACuCCauc -5'
4031 3' -57.6 NC_001650.1 + 132191 0.66 0.883225
Target:  5'- aCCgGGUucGAGGugGCCgUGGGGUGc -3'
miRNA:   3'- -GGaCCAccCUCCugUGGgACUCCAUc -5'
4031 3' -57.6 NC_001650.1 + 21531 0.66 0.881183
Target:  5'- aCUGcUGGGAGGGCcgcggcugcgguggACCCgGGGGUc- -3'
miRNA:   3'- gGACcACCCUCCUG--------------UGGGaCUCCAuc -5'
4031 3' -57.6 NC_001650.1 + 121586 0.66 0.876345
Target:  5'- aCCgcggGGgcgGcGGAGGGCagcGCCCUcGGGUGGc -3'
miRNA:   3'- -GGa---CCa--C-CCUCCUG---UGGGAcUCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 82345 0.66 0.876345
Target:  5'- uCCUGGUccuGGcaGAGGGCGCUCaG-GGUGGa -3'
miRNA:   3'- -GGACCA---CC--CUCCUGUGGGaCuCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 72294 0.66 0.876345
Target:  5'- aCCUGGUgGGGAGGuuCGugaaCCUGuacaacaacaGGGUGGa -3'
miRNA:   3'- -GGACCA-CCCUCCu-GUg---GGAC----------UCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 56136 0.66 0.876345
Target:  5'- -gUGGUGGGGcGGAUAugagcCCCUGuGGUu- -3'
miRNA:   3'- ggACCACCCU-CCUGU-----GGGACuCCAuc -5'
4031 3' -57.6 NC_001650.1 + 129258 0.67 0.869977
Target:  5'- cCCUGGUGGcccgcuccgccgccaAGGGCGCCCagaaGAGGa-- -3'
miRNA:   3'- -GGACCACCc--------------UCCUGUGGGa---CUCCauc -5'
4031 3' -57.6 NC_001650.1 + 66102 0.67 0.869259
Target:  5'- --aGGUGGGcGGGCACCUggcGGGGc-- -3'
miRNA:   3'- ggaCCACCCuCCUGUGGGa--CUCCauc -5'
4031 3' -57.6 NC_001650.1 + 126797 0.67 0.869259
Target:  5'- cUCUGG-GGGAGuGccgugcGCGCCCgggccgcagGGGGUGGg -3'
miRNA:   3'- -GGACCaCCCUC-C------UGUGGGa--------CUCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 17412 0.67 0.861973
Target:  5'- cCCgcauuagGGuUGGGAGGGC-CCC-GAGGgGGg -3'
miRNA:   3'- -GGa------CC-ACCCUCCUGuGGGaCUCCaUC- -5'
4031 3' -57.6 NC_001650.1 + 14921 0.67 0.861973
Target:  5'- gCCgGG-GGGAGGAgAUagggguaUGAGGUAGg -3'
miRNA:   3'- -GGaCCaCCCUCCUgUGgg-----ACUCCAUC- -5'
4031 3' -57.6 NC_001650.1 + 184119 0.67 0.861973
Target:  5'- cCCgcauuagGGuUGGGAGGGC-CCC-GAGGgGGg -3'
miRNA:   3'- -GGa------CC-ACCCUCCUGuGGGaCUCCaUC- -5'
4031 3' -57.6 NC_001650.1 + 328 0.67 0.846819
Target:  5'- uCUUGGUGGGc-GAcCACCUcgGGGGUGGc -3'
miRNA:   3'- -GGACCACCCucCU-GUGGGa-CUCCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.