miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4031 5' -63 NC_001650.1 + 91293 0.66 0.70165
Target:  5'- cCGCCAGCcCCCGGA--UCCUgCCCa-- -3'
miRNA:   3'- -GUGGUCGaGGGCCUccAGGA-GGGccc -5'
4031 5' -63 NC_001650.1 + 63100 0.66 0.70165
Target:  5'- gUACUcggGGCUCgCGGcguugAGGUCCgcgUCCCGGa -3'
miRNA:   3'- -GUGG---UCGAGgGCC-----UCCAGG---AGGGCCc -5'
4031 5' -63 NC_001650.1 + 61265 0.66 0.692255
Target:  5'- gGCCuGCUCCagccgCGcGAGGUCCgccaggacCCCGuGGg -3'
miRNA:   3'- gUGGuCGAGG-----GC-CUCCAGGa-------GGGC-CC- -5'
4031 5' -63 NC_001650.1 + 21511 0.66 0.692255
Target:  5'- gCGCCGGgaCCgGGGGGgcuaCUgCUGGGa -3'
miRNA:   3'- -GUGGUCgaGGgCCUCCag--GAgGGCCC- -5'
4031 5' -63 NC_001650.1 + 76891 0.66 0.692255
Target:  5'- gGCU-GCcCCCGGGGGUC-UCCgUGGGg -3'
miRNA:   3'- gUGGuCGaGGGCCUCCAGgAGG-GCCC- -5'
4031 5' -63 NC_001650.1 + 171730 0.66 0.686597
Target:  5'- gGCCuccgugugucugauaGGCggaCGGGGGUCCcUCCGGGg -3'
miRNA:   3'- gUGG---------------UCGaggGCCUCCAGGaGGGCCC- -5'
4031 5' -63 NC_001650.1 + 5023 0.66 0.686597
Target:  5'- gGCCuccgugugucugauaGGCggaCGGGGGUCCcUCCGGGg -3'
miRNA:   3'- gUGG---------------UCGaggGCCUCCAGGaGGGCCC- -5'
4031 5' -63 NC_001650.1 + 157679 0.66 0.686597
Target:  5'- aCACCugccccccgcguggaGGUUgCCCaGGAGGgacgccUCCUCCaCGGGg -3'
miRNA:   3'- -GUGG---------------UCGA-GGG-CCUCC------AGGAGG-GCCC- -5'
4031 5' -63 NC_001650.1 + 112297 0.66 0.682816
Target:  5'- gGCCAGCcgCCCGGuguuGGUCCaguaggacucuaUCaCCaGGGc -3'
miRNA:   3'- gUGGUCGa-GGGCCu---CCAGG------------AG-GG-CCC- -5'
4031 5' -63 NC_001650.1 + 103339 0.66 0.682816
Target:  5'- aCGCCAGagauaaugUCCUGGA--UCCUCgCGGGg -3'
miRNA:   3'- -GUGGUCg-------AGGGCCUccAGGAGgGCCC- -5'
4031 5' -63 NC_001650.1 + 27582 0.66 0.682816
Target:  5'- gGCCuGCccuccuUCCCGGGcgugcccgccucGGcCCUCUCGGGc -3'
miRNA:   3'- gUGGuCG------AGGGCCU------------CCaGGAGGGCCC- -5'
4031 5' -63 NC_001650.1 + 50148 0.66 0.682816
Target:  5'- cUAgCAGCUCUCugaGGAGGUCC-CugaagcugggCCGGGg -3'
miRNA:   3'- -GUgGUCGAGGG---CCUCCAGGaG----------GGCCC- -5'
4031 5' -63 NC_001650.1 + 102329 0.66 0.682816
Target:  5'- -cCCAGCagaUCCCGGGGGaccaCUCCCa-- -3'
miRNA:   3'- guGGUCG---AGGGCCUCCag--GAGGGccc -5'
4031 5' -63 NC_001650.1 + 132929 0.66 0.682816
Target:  5'- --aCAGCcgCCCGaGGGUCCcCCCGcGGc -3'
miRNA:   3'- gugGUCGa-GGGCcUCCAGGaGGGC-CC- -5'
4031 5' -63 NC_001650.1 + 53863 0.66 0.673341
Target:  5'- -uCCAGcCUCCUGGAGGagaugcUCaCguugCCUGGGg -3'
miRNA:   3'- guGGUC-GAGGGCCUCC------AG-Ga---GGGCCC- -5'
4031 5' -63 NC_001650.1 + 25802 0.66 0.673341
Target:  5'- aCACCAGCgUCCaGAGGUggaC-CCUGGGa -3'
miRNA:   3'- -GUGGUCGaGGGcCUCCAg--GaGGGCCC- -5'
4031 5' -63 NC_001650.1 + 62008 0.66 0.663837
Target:  5'- gCACCAGCUCCCucgccGcGGUCCaggCCuCGuGGa -3'
miRNA:   3'- -GUGGUCGAGGGc----CuCCAGGa--GG-GC-CC- -5'
4031 5' -63 NC_001650.1 + 52597 0.66 0.65431
Target:  5'- uCGCCcgggAGCUCUgGGAuGGgggCCacuggCCCGGGg -3'
miRNA:   3'- -GUGG----UCGAGGgCCU-CCa--GGa----GGGCCC- -5'
4031 5' -63 NC_001650.1 + 42531 0.66 0.65431
Target:  5'- cCACCGGCgcgCCCGGAccGUCacaCCCGaGGu -3'
miRNA:   3'- -GUGGUCGa--GGGCCUc-CAGga-GGGC-CC- -5'
4031 5' -63 NC_001650.1 + 71582 0.66 0.65431
Target:  5'- gCACgAGCUCCUcaaacuGGAGGUCCaCCCc-- -3'
miRNA:   3'- -GUGgUCGAGGG------CCUCCAGGaGGGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.