miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 11687 0.66 0.814872
Target:  5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3'
miRNA:   3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 156844 0.66 0.814872
Target:  5'- --uGGGUCAGGG-CC--UCCaCCCUCUg -3'
miRNA:   3'- guuUCCAGUCCCuGGacAGG-GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 112529 0.66 0.814872
Target:  5'- gCGGGGGcCAGGGACUgggggaUGUUgCCCaCCa -3'
miRNA:   3'- -GUUUCCaGUCCCUGG------ACAGgGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 178394 0.66 0.814872
Target:  5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3'
miRNA:   3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 48242 0.66 0.814872
Target:  5'- cCGAGGGUCucgaGGGGGgCUGcuUCCaggcggcuagCCCCCUa -3'
miRNA:   3'- -GUUUCCAG----UCCCUgGAC--AGG----------GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 163524 0.66 0.812345
Target:  5'- -cAGGGUaGGGGcggcccggcaccagACCccccGUCCCCCCCg -3'
miRNA:   3'- guUUCCAgUCCC--------------UGGa---CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 180526 0.66 0.806394
Target:  5'- ---cGG-CGGGGACCaUGUgCCCCUUa -3'
miRNA:   3'- guuuCCaGUCCCUGG-ACAgGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 13819 0.66 0.806394
Target:  5'- ---cGG-CGGGGACCaUGUgCCCCUUa -3'
miRNA:   3'- guuuCCaGUCCCUGG-ACAgGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 13425 0.66 0.797769
Target:  5'- ------aCAGGGGaugCUGUUCCCCCCa -3'
miRNA:   3'- guuuccaGUCCCUg--GACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 180132 0.66 0.797769
Target:  5'- ------aCAGGGGaugCUGUUCCCCCCa -3'
miRNA:   3'- guuuccaGUCCCUg--GACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 52123 0.66 0.797769
Target:  5'- gUAGGGGUaGGGGGuCCccgGcUCCCCUCCUg -3'
miRNA:   3'- -GUUUCCAgUCCCU-GGa--C-AGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 149038 0.66 0.789003
Target:  5'- --cGGGUcCAGGGugCUGguguggggcaCCaCCCCCg -3'
miRNA:   3'- guuUCCA-GUCCCugGACa---------GG-GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 9834 0.66 0.789003
Target:  5'- ---uGG-CAGGGuugUUGUCCCUCCCUg -3'
miRNA:   3'- guuuCCaGUCCCug-GACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 176541 0.66 0.789003
Target:  5'- ---uGG-CAGGGuugUUGUCCCUCCCUg -3'
miRNA:   3'- guuuCCaGUCCCug-GACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 167230 0.66 0.789003
Target:  5'- cCAGAGGgc-GGGACUagcuagaGUCCCCuCCCa -3'
miRNA:   3'- -GUUUCCaguCCCUGGa------CAGGGG-GGGa -5'
4032 3' -59.6 NC_001650.1 + 523 0.66 0.789003
Target:  5'- cCAGAGGgc-GGGACUagcuagaGUCCCCuCCCa -3'
miRNA:   3'- -GUUUCCaguCCCUGGa------CAGGGG-GGGa -5'
4032 3' -59.6 NC_001650.1 + 65863 0.66 0.780105
Target:  5'- aGAGGGUCGGGGACCaGgCagaUUCCCa -3'
miRNA:   3'- gUUUCCAGUCCCUGGaCaGg--GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 143937 0.66 0.780105
Target:  5'- --cAGGUgCcuGGugCUGUCCCCUCUg -3'
miRNA:   3'- guuUCCA-GucCCugGACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 157516 0.66 0.780105
Target:  5'- cCGGAGGUCcucccGGGACa----CCCCCCUg -3'
miRNA:   3'- -GUUUCCAGu----CCCUGgacagGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 94813 0.66 0.780105
Target:  5'- aAAAGGUCccGGGACCccGUCUCCaccaCCCg -3'
miRNA:   3'- gUUUCCAGu-CCCUGGa-CAGGGG----GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.