Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
4032 | 3' | -59.6 | NC_001650.1 | + | 94813 | 0.66 | 0.780105 |
Target: 5'- aAAAGGUCccGGGACCccGUCUCCaccaCCCg -3' miRNA: 3'- gUUUCCAGu-CCCUGGa-CAGGGG----GGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 52123 | 0.66 | 0.797769 |
Target: 5'- gUAGGGGUaGGGGGuCCccgGcUCCCCUCCUg -3' miRNA: 3'- -GUUUCCAgUCCCU-GGa--C-AGGGGGGGA- -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 54550 | 0.66 | 0.771083 |
Target: 5'- gGAGGGUCGaGGACagggUGgagCCCUCCCUc -3' miRNA: 3'- gUUUCCAGUcCCUGg---ACa--GGGGGGGA- -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 11875 | 0.66 | 0.771083 |
Target: 5'- cCGGGGGUCuaaGGGGGCCg--CCCacucuaCCCUg -3' miRNA: 3'- -GUUUCCAG---UCCCUGGacaGGGg-----GGGA- -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 65773 | 0.66 | 0.771083 |
Target: 5'- ---cGGuguUCAGGGACCUcUCCCCgCUg -3' miRNA: 3'- guuuCC---AGUCCCUGGAcAGGGGgGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 149038 | 0.66 | 0.789003 |
Target: 5'- --cGGGUcCAGGGugCUGguguggggcaCCaCCCCCg -3' miRNA: 3'- guuUCCA-GUCCCugGACa---------GG-GGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 11687 | 0.66 | 0.814872 |
Target: 5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3' miRNA: 3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 178394 | 0.66 | 0.814872 |
Target: 5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3' miRNA: 3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 120349 | 0.67 | 0.761946 |
Target: 5'- aGAAaGUCAGGGugCUgguggaccuggaGUCCgCCCCg -3' miRNA: 3'- gUUUcCAGUCCCugGA------------CAGGgGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 154958 | 0.67 | 0.73392 |
Target: 5'- --cGGGaUCAGGuuCUUGUCCaCCCCCc -3' miRNA: 3'- guuUCC-AGUCCcuGGACAGG-GGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 162537 | 0.67 | 0.743356 |
Target: 5'- ---uGGaCAGGGugCaGggCCCCCCCg -3' miRNA: 3'- guuuCCaGUCCCugGaCa-GGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 2435 | 0.67 | 0.743356 |
Target: 5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3' miRNA: 3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 3867 | 0.67 | 0.761946 |
Target: 5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3' miRNA: 3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 169142 | 0.67 | 0.743356 |
Target: 5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3' miRNA: 3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 170738 | 0.67 | 0.73392 |
Target: 5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3' miRNA: 3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 104745 | 0.67 | 0.761946 |
Target: 5'- aGAGGaGUCAGaGGACgCccUCCCCCCUa -3' miRNA: 3'- gUUUC-CAGUC-CCUG-GacAGGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 170574 | 0.67 | 0.761946 |
Target: 5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3' miRNA: 3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 40413 | 0.67 | 0.73392 |
Target: 5'- -cGGGGUCAcGcGGugguagaugucaGCCgGUCCCCCCCc -3' miRNA: 3'- guUUCCAGU-C-CC------------UGGaCAGGGGGGGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 96828 | 0.67 | 0.714809 |
Target: 5'- cUAAAGGcCAGucccguGGCCUGUCCCCCgUg -3' miRNA: 3'- -GUUUCCaGUCc-----CUGGACAGGGGGgGa -5' |
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4032 | 3' | -59.6 | NC_001650.1 | + | 4031 | 0.67 | 0.73392 |
Target: 5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3' miRNA: 3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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