miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 158623 1.06 0.002573
Target:  5'- uCAAAGGUCAGGGACCUGUCCCCCCCUc -3'
miRNA:   3'- -GUUUCCAGUCCCUGGACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 111570 0.75 0.311905
Target:  5'- aGAAGGUgauagaCAGGGGCaUGUCCCCCCa- -3'
miRNA:   3'- gUUUCCA------GUCCCUGgACAGGGGGGga -5'
4032 3' -59.6 NC_001650.1 + 55464 0.74 0.363202
Target:  5'- ---cGGUCAGGGuCCUGgacacggCgCCCCCCUc -3'
miRNA:   3'- guuuCCAGUCCCuGGACa------G-GGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 27842 0.73 0.386909
Target:  5'- --cAGGcUCAGGGACagguUCCCCCCCg -3'
miRNA:   3'- guuUCC-AGUCCCUGgac-AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 71 0.72 0.43727
Target:  5'- -cGAGGagAGGGGCCcgGgaaaCCCCCCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGa-Ca---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 166778 0.72 0.43727
Target:  5'- -cGAGGagAGGGGCCcgGgaaaCCCCCCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGa-Ca---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 57373 0.72 0.472859
Target:  5'- --uGGGUCAcugugaccuguGGGGCCUGcggCUCCCCCa -3'
miRNA:   3'- guuUCCAGU-----------CCCUGGACa--GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 146149 0.71 0.524985
Target:  5'- ---cGGaCAGGGugcccacgcccguCCUGUCCCCCCUg -3'
miRNA:   3'- guuuCCaGUCCCu------------GGACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 128861 0.7 0.55768
Target:  5'- gAGAGGcUCAGGGAgCUGgCCUCCuCCg -3'
miRNA:   3'- gUUUCC-AGUCCCUgGACaGGGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 135820 0.7 0.55768
Target:  5'- uGAAGGgguugccgCAGGGcACC-GUCCUCCCCc -3'
miRNA:   3'- gUUUCCa-------GUCCC-UGGaCAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 87912 0.7 0.586994
Target:  5'- ---uGGUCGGGGcgagACCUGauaucagucuUCCCCCUCUu -3'
miRNA:   3'- guuuCCAGUCCC----UGGAC----------AGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 165758 0.69 0.600779
Target:  5'- --uAGGcCuagGGGGGCCUGUgggacaucuccuacaCCCCCCCa -3'
miRNA:   3'- guuUCCaG---UCCCUGGACA---------------GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 110644 0.69 0.6067
Target:  5'- aGAAGaGUcCGGGGACCcGUCCccgcgcacgcgCCCCCUc -3'
miRNA:   3'- gUUUC-CA-GUCCCUGGaCAGG-----------GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 62050 0.69 0.646269
Target:  5'- cCAGcAGGUugccCAGGGcGCCgccGUCUCCCCCUc -3'
miRNA:   3'- -GUU-UCCA----GUCCC-UGGa--CAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 134431 0.68 0.66602
Target:  5'- --cAGGUCGGGGuugaUGUugcUCCCCCCUa -3'
miRNA:   3'- guuUCCAGUCCCugg-ACA---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 50580 0.68 0.675861
Target:  5'- ---cGGUCAGGG-CCg--CCCCCaCCg -3'
miRNA:   3'- guuuCCAGUCCCuGGacaGGGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 25407 0.68 0.685668
Target:  5'- -cAGGGcgGGGGACCUGaCCCUCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGACaGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 131270 0.68 0.685668
Target:  5'- aAGAGGUCuGGGaACCcccggCCCCUCCg -3'
miRNA:   3'- gUUUCCAGuCCC-UGGaca--GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 75486 0.68 0.694459
Target:  5'- gAGGGGcUCGGGGAagaggCUGUCuuugacgCCCCCCg -3'
miRNA:   3'- gUUUCC-AGUCCCUg----GACAG-------GGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 73298 0.68 0.695434
Target:  5'- aAGAGcGgcugugCcGGGGCCUGcucgCCCCCCCa -3'
miRNA:   3'- gUUUC-Ca-----GuCCCUGGACa---GGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.