miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 62150 0.67 0.714809
Target:  5'- -cAGGGUCAGGGggcGCCUGaugugggccagCCCCgCCg -3'
miRNA:   3'- guUUCCAGUCCC---UGGACa----------GGGGgGGa -5'
4032 3' -59.6 NC_001650.1 + 96828 0.67 0.714809
Target:  5'- cUAAAGGcCAGucccguGGCCUGUCCCCCgUg -3'
miRNA:   3'- -GUUUCCaGUCc-----CUGGACAGGGGGgGa -5'
4032 3' -59.6 NC_001650.1 + 154958 0.67 0.73392
Target:  5'- --cGGGaUCAGGuuCUUGUCCaCCCCCc -3'
miRNA:   3'- guuUCC-AGUCCcuGGACAGG-GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 40413 0.67 0.73392
Target:  5'- -cGGGGUCAcGcGGugguagaugucaGCCgGUCCCCCCCc -3'
miRNA:   3'- guUUCCAGU-C-CC------------UGGaCAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 4031 0.67 0.73392
Target:  5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3'
miRNA:   3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5'
4032 3' -59.6 NC_001650.1 + 170738 0.67 0.73392
Target:  5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3'
miRNA:   3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5'
4032 3' -59.6 NC_001650.1 + 136090 0.67 0.743356
Target:  5'- uGAAGG-CGGGGGCggccUUGUCCagCCCCa -3'
miRNA:   3'- gUUUCCaGUCCCUG----GACAGGg-GGGGa -5'
4032 3' -59.6 NC_001650.1 + 2435 0.67 0.743356
Target:  5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3'
miRNA:   3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 162537 0.67 0.743356
Target:  5'- ---uGGaCAGGGugCaGggCCCCCCCg -3'
miRNA:   3'- guuuCCaGUCCCugGaCa-GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 169142 0.67 0.743356
Target:  5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3'
miRNA:   3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 170574 0.67 0.761946
Target:  5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3'
miRNA:   3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 3867 0.67 0.761946
Target:  5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3'
miRNA:   3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 120349 0.67 0.761946
Target:  5'- aGAAaGUCAGGGugCUgguggaccuggaGUCCgCCCCg -3'
miRNA:   3'- gUUUcCAGUCCCugGA------------CAGGgGGGGa -5'
4032 3' -59.6 NC_001650.1 + 104745 0.67 0.761946
Target:  5'- aGAGGaGUCAGaGGACgCccUCCCCCCUa -3'
miRNA:   3'- gUUUC-CAGUC-CCUG-GacAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 117024 0.66 0.770175
Target:  5'- ---uGGUCcacaaacGGGGACCUGgCCgCCgCCCUg -3'
miRNA:   3'- guuuCCAG-------UCCCUGGACaGG-GG-GGGA- -5'
4032 3' -59.6 NC_001650.1 + 54550 0.66 0.771083
Target:  5'- gGAGGGUCGaGGACagggUGgagCCCUCCCUc -3'
miRNA:   3'- gUUUCCAGUcCCUGg---ACa--GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 11875 0.66 0.771083
Target:  5'- cCGGGGGUCuaaGGGGGCCg--CCCacucuaCCCUg -3'
miRNA:   3'- -GUUUCCAG---UCCCUGGacaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 65773 0.66 0.771083
Target:  5'- ---cGGuguUCAGGGACCUcUCCCCgCUg -3'
miRNA:   3'- guuuCC---AGUCCCUGGAcAGGGGgGGa -5'
4032 3' -59.6 NC_001650.1 + 135878 0.66 0.771083
Target:  5'- --cAGGUCguggucggagagGGGGGCCUcugCCCgCCCCUc -3'
miRNA:   3'- guuUCCAG------------UCCCUGGAca-GGG-GGGGA- -5'
4032 3' -59.6 NC_001650.1 + 32164 0.66 0.771083
Target:  5'- uGGGGGUCGGGGgcggGCCUcgcGUCgUCCUCUg -3'
miRNA:   3'- gUUUCCAGUCCC----UGGA---CAGgGGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.