miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 71 0.72 0.43727
Target:  5'- -cGAGGagAGGGGCCcgGgaaaCCCCCCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGa-Ca---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 523 0.66 0.789003
Target:  5'- cCAGAGGgc-GGGACUagcuagaGUCCCCuCCCa -3'
miRNA:   3'- -GUUUCCaguCCCUGGa------CAGGGG-GGGa -5'
4032 3' -59.6 NC_001650.1 + 2435 0.67 0.743356
Target:  5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3'
miRNA:   3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 3867 0.67 0.761946
Target:  5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3'
miRNA:   3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 4031 0.67 0.73392
Target:  5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3'
miRNA:   3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5'
4032 3' -59.6 NC_001650.1 + 9834 0.66 0.789003
Target:  5'- ---uGG-CAGGGuugUUGUCCCUCCCUg -3'
miRNA:   3'- guuuCCaGUCCCug-GACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 11687 0.66 0.814872
Target:  5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3'
miRNA:   3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 11875 0.66 0.771083
Target:  5'- cCGGGGGUCuaaGGGGGCCg--CCCacucuaCCCUg -3'
miRNA:   3'- -GUUUCCAG---UCCCUGGacaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 13425 0.66 0.797769
Target:  5'- ------aCAGGGGaugCUGUUCCCCCCa -3'
miRNA:   3'- guuuccaGUCCCUg--GACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 13819 0.66 0.806394
Target:  5'- ---cGG-CGGGGACCaUGUgCCCCUUa -3'
miRNA:   3'- guuuCCaGUCCCUGG-ACAgGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 23931 0.66 0.771991
Target:  5'- cCAGcAGGUCAGGGGCCagaagaguacacgggGUCCCCg--- -3'
miRNA:   3'- -GUU-UCCAGUCCCUGGa--------------CAGGGGggga -5'
4032 3' -59.6 NC_001650.1 + 25407 0.68 0.685668
Target:  5'- -cAGGGcgGGGGACCUGaCCCUCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGACaGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 27842 0.73 0.386909
Target:  5'- --cAGGcUCAGGGACagguUCCCCCCCg -3'
miRNA:   3'- guuUCC-AGUCCCUGgac-AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 32164 0.66 0.771083
Target:  5'- uGGGGGUCGGGGgcggGCCUcgcGUCgUCCUCUg -3'
miRNA:   3'- gUUUCCAGUCCC----UGGA---CAGgGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 40413 0.67 0.73392
Target:  5'- -cGGGGUCAcGcGGugguagaugucaGCCgGUCCCCCCCc -3'
miRNA:   3'- guUUCCAGU-C-CC------------UGGaCAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 48242 0.66 0.814872
Target:  5'- cCGAGGGUCucgaGGGGGgCUGcuUCCaggcggcuagCCCCCUa -3'
miRNA:   3'- -GUUUCCAG----UCCCUgGAC--AGG----------GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 50580 0.68 0.675861
Target:  5'- ---cGGUCAGGG-CCg--CCCCCaCCg -3'
miRNA:   3'- guuuCCAGUCCCuGGacaGGGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 52123 0.66 0.797769
Target:  5'- gUAGGGGUaGGGGGuCCccgGcUCCCCUCCUg -3'
miRNA:   3'- -GUUUCCAgUCCCU-GGa--C-AGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 54550 0.66 0.771083
Target:  5'- gGAGGGUCGaGGACagggUGgagCCCUCCCUc -3'
miRNA:   3'- gUUUCCAGUcCCUGg---ACa--GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 55464 0.74 0.363202
Target:  5'- ---cGGUCAGGGuCCUGgacacggCgCCCCCCUc -3'
miRNA:   3'- guuuCCAGUCCCuGGACa------G-GGGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.