miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 57373 0.72 0.472859
Target:  5'- --uGGGUCAcugugaccuguGGGGCCUGcggCUCCCCCa -3'
miRNA:   3'- guuUCCAGU-----------CCCUGGACa--GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 62050 0.69 0.646269
Target:  5'- cCAGcAGGUugccCAGGGcGCCgccGUCUCCCCCUc -3'
miRNA:   3'- -GUU-UCCA----GUCCC-UGGa--CAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 62150 0.67 0.714809
Target:  5'- -cAGGGUCAGGGggcGCCUGaugugggccagCCCCgCCg -3'
miRNA:   3'- guUUCCAGUCCC---UGGACa----------GGGGgGGa -5'
4032 3' -59.6 NC_001650.1 + 65773 0.66 0.771083
Target:  5'- ---cGGuguUCAGGGACCUcUCCCCgCUg -3'
miRNA:   3'- guuuCC---AGUCCCUGGAcAGGGGgGGa -5'
4032 3' -59.6 NC_001650.1 + 65863 0.66 0.780105
Target:  5'- aGAGGGUCGGGGACCaGgCagaUUCCCa -3'
miRNA:   3'- gUUUCCAGUCCCUGGaCaGg--GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 73298 0.68 0.695434
Target:  5'- aAGAGcGgcugugCcGGGGCCUGcucgCCCCCCCa -3'
miRNA:   3'- gUUUC-Ca-----GuCCCUGGACa---GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 75486 0.68 0.694459
Target:  5'- gAGGGGcUCGGGGAagaggCUGUCuuugacgCCCCCCg -3'
miRNA:   3'- gUUUCC-AGUCCCUg----GACAG-------GGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 87912 0.7 0.586994
Target:  5'- ---uGGUCGGGGcgagACCUGauaucagucuUCCCCCUCUu -3'
miRNA:   3'- guuuCCAGUCCC----UGGAC----------AGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 94813 0.66 0.780105
Target:  5'- aAAAGGUCccGGGACCccGUCUCCaccaCCCg -3'
miRNA:   3'- gUUUCCAGu-CCCUGGa-CAGGGG----GGGa -5'
4032 3' -59.6 NC_001650.1 + 96828 0.67 0.714809
Target:  5'- cUAAAGGcCAGucccguGGCCUGUCCCCCgUg -3'
miRNA:   3'- -GUUUCCaGUCc-----CUGGACAGGGGGgGa -5'
4032 3' -59.6 NC_001650.1 + 104745 0.67 0.761946
Target:  5'- aGAGGaGUCAGaGGACgCccUCCCCCCUa -3'
miRNA:   3'- gUUUC-CAGUC-CCUG-GacAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 110644 0.69 0.6067
Target:  5'- aGAAGaGUcCGGGGACCcGUCCccgcgcacgcgCCCCCUc -3'
miRNA:   3'- gUUUC-CA-GUCCCUGGaCAGG-----------GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 111570 0.75 0.311905
Target:  5'- aGAAGGUgauagaCAGGGGCaUGUCCCCCCa- -3'
miRNA:   3'- gUUUCCA------GUCCCUGgACAGGGGGGga -5'
4032 3' -59.6 NC_001650.1 + 112529 0.66 0.814872
Target:  5'- gCGGGGGcCAGGGACUgggggaUGUUgCCCaCCa -3'
miRNA:   3'- -GUUUCCaGUCCCUGG------ACAGgGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 117024 0.66 0.770175
Target:  5'- ---uGGUCcacaaacGGGGACCUGgCCgCCgCCCUg -3'
miRNA:   3'- guuuCCAG-------UCCCUGGACaGG-GG-GGGA- -5'
4032 3' -59.6 NC_001650.1 + 120349 0.67 0.761946
Target:  5'- aGAAaGUCAGGGugCUgguggaccuggaGUCCgCCCCg -3'
miRNA:   3'- gUUUcCAGUCCCugGA------------CAGGgGGGGa -5'
4032 3' -59.6 NC_001650.1 + 128861 0.7 0.55768
Target:  5'- gAGAGGcUCAGGGAgCUGgCCUCCuCCg -3'
miRNA:   3'- gUUUCC-AGUCCCUgGACaGGGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 131270 0.68 0.685668
Target:  5'- aAGAGGUCuGGGaACCcccggCCCCUCCg -3'
miRNA:   3'- gUUUCCAGuCCC-UGGaca--GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 134431 0.68 0.66602
Target:  5'- --cAGGUCGGGGuugaUGUugcUCCCCCCUa -3'
miRNA:   3'- guuUCCAGUCCCugg-ACA---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 135820 0.7 0.55768
Target:  5'- uGAAGGgguugccgCAGGGcACC-GUCCUCCCCc -3'
miRNA:   3'- gUUUCCa-------GUCCC-UGGaCAGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.