miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 180526 0.66 0.806394
Target:  5'- ---cGG-CGGGGACCaUGUgCCCCUUa -3'
miRNA:   3'- guuuCCaGUCCCUGG-ACAgGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 180132 0.66 0.797769
Target:  5'- ------aCAGGGGaugCUGUUCCCCCCa -3'
miRNA:   3'- guuuccaGUCCCUg--GACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 178582 0.66 0.771083
Target:  5'- cCGGGGGUCuaaGGGGGCCg--CCCacucuaCCCUg -3'
miRNA:   3'- -GUUUCCAG---UCCCUGGacaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 178394 0.66 0.814872
Target:  5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3'
miRNA:   3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 176541 0.66 0.789003
Target:  5'- ---uGG-CAGGGuugUUGUCCCUCCCUg -3'
miRNA:   3'- guuuCCaGUCCCug-GACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 170738 0.67 0.73392
Target:  5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3'
miRNA:   3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5'
4032 3' -59.6 NC_001650.1 + 170574 0.67 0.761946
Target:  5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3'
miRNA:   3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 169142 0.67 0.743356
Target:  5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3'
miRNA:   3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 167230 0.66 0.789003
Target:  5'- cCAGAGGgc-GGGACUagcuagaGUCCCCuCCCa -3'
miRNA:   3'- -GUUUCCaguCCCUGGa------CAGGGG-GGGa -5'
4032 3' -59.6 NC_001650.1 + 166778 0.72 0.43727
Target:  5'- -cGAGGagAGGGGCCcgGgaaaCCCCCCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGa-Ca---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 165758 0.69 0.600779
Target:  5'- --uAGGcCuagGGGGGCCUGUgggacaucuccuacaCCCCCCCa -3'
miRNA:   3'- guuUCCaG---UCCCUGGACA---------------GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 163524 0.66 0.812345
Target:  5'- -cAGGGUaGGGGcggcccggcaccagACCccccGUCCCCCCCg -3'
miRNA:   3'- guUUCCAgUCCC--------------UGGa---CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 162537 0.67 0.743356
Target:  5'- ---uGGaCAGGGugCaGggCCCCCCCg -3'
miRNA:   3'- guuuCCaGUCCCugGaCa-GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 158623 1.06 0.002573
Target:  5'- uCAAAGGUCAGGGACCUGUCCCCCCCUc -3'
miRNA:   3'- -GUUUCCAGUCCCUGGACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 157516 0.66 0.780105
Target:  5'- cCGGAGGUCcucccGGGACa----CCCCCCUg -3'
miRNA:   3'- -GUUUCCAGu----CCCUGgacagGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 156844 0.66 0.814872
Target:  5'- --uGGGUCAGGG-CC--UCCaCCCUCUg -3'
miRNA:   3'- guuUCCAGUCCCuGGacAGG-GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 154958 0.67 0.73392
Target:  5'- --cGGGaUCAGGuuCUUGUCCaCCCCCc -3'
miRNA:   3'- guuUCC-AGUCCcuGGACAGG-GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 149038 0.66 0.789003
Target:  5'- --cGGGUcCAGGGugCUGguguggggcaCCaCCCCCg -3'
miRNA:   3'- guuUCCA-GUCCCugGACa---------GG-GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 146149 0.71 0.524985
Target:  5'- ---cGGaCAGGGugcccacgcccguCCUGUCCCCCCUg -3'
miRNA:   3'- guuuCCaGUCCCu------------GGACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 143937 0.66 0.780105
Target:  5'- --cAGGUgCcuGGugCUGUCCCCUCUg -3'
miRNA:   3'- guuUCCA-GucCCugGACAGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.