miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 52123 0.66 0.797769
Target:  5'- gUAGGGGUaGGGGGuCCccgGcUCCCCUCCUg -3'
miRNA:   3'- -GUUUCCAgUCCCU-GGa--C-AGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 13819 0.66 0.806394
Target:  5'- ---cGG-CGGGGACCaUGUgCCCCUUa -3'
miRNA:   3'- guuuCCaGUCCCUGG-ACAgGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 180526 0.66 0.806394
Target:  5'- ---cGG-CGGGGACCaUGUgCCCCUUa -3'
miRNA:   3'- guuuCCaGUCCCUGG-ACAgGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 112529 0.66 0.814872
Target:  5'- gCGGGGGcCAGGGACUgggggaUGUUgCCCaCCa -3'
miRNA:   3'- -GUUUCCaGUCCCUGG------ACAGgGGG-GGa -5'
4032 3' -59.6 NC_001650.1 + 156844 0.66 0.814872
Target:  5'- --uGGGUCAGGG-CC--UCCaCCCUCUg -3'
miRNA:   3'- guuUCCAGUCCCuGGacAGG-GGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 11687 0.66 0.814872
Target:  5'- uGGGGGccuaGGGGGCCUG-CCCacucuaCCCUa -3'
miRNA:   3'- gUUUCCag--UCCCUGGACaGGGg-----GGGA- -5'
4032 3' -59.6 NC_001650.1 + 3867 0.67 0.761946
Target:  5'- -cAGGGcCAGGGuCUggcagcGUCCCCCUCa -3'
miRNA:   3'- guUUCCaGUCCCuGGa-----CAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 169142 0.67 0.743356
Target:  5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3'
miRNA:   3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 62050 0.69 0.646269
Target:  5'- cCAGcAGGUugccCAGGGcGCCgccGUCUCCCCCUc -3'
miRNA:   3'- -GUU-UCCA----GUCCC-UGGa--CAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 134431 0.68 0.66602
Target:  5'- --cAGGUCGGGGuugaUGUugcUCCCCCCUa -3'
miRNA:   3'- guuUCCAGUCCCugg-ACA---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 25407 0.68 0.685668
Target:  5'- -cAGGGcgGGGGACCUGaCCCUCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGACaGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 131270 0.68 0.685668
Target:  5'- aAGAGGUCuGGGaACCcccggCCCCUCCg -3'
miRNA:   3'- gUUUCCAGuCCC-UGGaca--GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 75486 0.68 0.694459
Target:  5'- gAGGGGcUCGGGGAagaggCUGUCuuugacgCCCCCCg -3'
miRNA:   3'- gUUUCC-AGUCCCUg----GACAG-------GGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 73298 0.68 0.695434
Target:  5'- aAGAGcGgcugugCcGGGGCCUGcucgCCCCCCCa -3'
miRNA:   3'- gUUUC-Ca-----GuCCCUGGACa---GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 62150 0.67 0.714809
Target:  5'- -cAGGGUCAGGGggcGCCUGaugugggccagCCCCgCCg -3'
miRNA:   3'- guUUCCAGUCCC---UGGACa----------GGGGgGGa -5'
4032 3' -59.6 NC_001650.1 + 4031 0.67 0.73392
Target:  5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3'
miRNA:   3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5'
4032 3' -59.6 NC_001650.1 + 154958 0.67 0.73392
Target:  5'- --cGGGaUCAGGuuCUUGUCCaCCCCCc -3'
miRNA:   3'- guuUCC-AGUCCcuGGACAGG-GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 170738 0.67 0.73392
Target:  5'- uGAAGGUCAGGGGgC-GUCUCCaugauguaCCCg -3'
miRNA:   3'- gUUUCCAGUCCCUgGaCAGGGG--------GGGa -5'
4032 3' -59.6 NC_001650.1 + 162537 0.67 0.743356
Target:  5'- ---uGGaCAGGGugCaGggCCCCCCCg -3'
miRNA:   3'- guuuCCaGUCCCugGaCa-GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 2435 0.67 0.743356
Target:  5'- aAGAGGaagCGggcGGGGCCgucccuUCCCCCCCa -3'
miRNA:   3'- gUUUCCa--GU---CCCUGGac----AGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.