miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 3' -59.6 NC_001650.1 + 146149 0.71 0.524985
Target:  5'- ---cGGaCAGGGugcccacgcccguCCUGUCCCCCCUg -3'
miRNA:   3'- guuuCCaGUCCCu------------GGACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 57373 0.72 0.472859
Target:  5'- --uGGGUCAcugugaccuguGGGGCCUGcggCUCCCCCa -3'
miRNA:   3'- guuUCCAGU-----------CCCUGGACa--GGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 166778 0.72 0.43727
Target:  5'- -cGAGGagAGGGGCCcgGgaaaCCCCCCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGa-Ca---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 71 0.72 0.43727
Target:  5'- -cGAGGagAGGGGCCcgGgaaaCCCCCCCUc -3'
miRNA:   3'- guUUCCagUCCCUGGa-Ca---GGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 27842 0.73 0.386909
Target:  5'- --cAGGcUCAGGGACagguUCCCCCCCg -3'
miRNA:   3'- guuUCC-AGUCCCUGgac-AGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 136090 0.67 0.743356
Target:  5'- uGAAGG-CGGGGGCggccUUGUCCagCCCCa -3'
miRNA:   3'- gUUUCCaGUCCCUG----GACAGGg-GGGGa -5'
4032 3' -59.6 NC_001650.1 + 104745 0.67 0.761946
Target:  5'- aGAGGaGUCAGaGGACgCccUCCCCCCUa -3'
miRNA:   3'- gUUUC-CAGUC-CCUG-GacAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 120349 0.67 0.761946
Target:  5'- aGAAaGUCAGGGugCUgguggaccuggaGUCCgCCCCg -3'
miRNA:   3'- gUUUcCAGUCCCugGA------------CAGGgGGGGa -5'
4032 3' -59.6 NC_001650.1 + 180132 0.66 0.797769
Target:  5'- ------aCAGGGGaugCUGUUCCCCCCa -3'
miRNA:   3'- guuuccaGUCCCUg--GACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 13425 0.66 0.797769
Target:  5'- ------aCAGGGGaugCUGUUCCCCCCa -3'
miRNA:   3'- guuuccaGUCCCUg--GACAGGGGGGGa -5'
4032 3' -59.6 NC_001650.1 + 167230 0.66 0.789003
Target:  5'- cCAGAGGgc-GGGACUagcuagaGUCCCCuCCCa -3'
miRNA:   3'- -GUUUCCaguCCCUGGa------CAGGGG-GGGa -5'
4032 3' -59.6 NC_001650.1 + 523 0.66 0.789003
Target:  5'- cCAGAGGgc-GGGACUagcuagaGUCCCCuCCCa -3'
miRNA:   3'- -GUUUCCaguCCCUGGa------CAGGGG-GGGa -5'
4032 3' -59.6 NC_001650.1 + 176541 0.66 0.789003
Target:  5'- ---uGG-CAGGGuugUUGUCCCUCCCUg -3'
miRNA:   3'- guuuCCaGUCCCug-GACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 9834 0.66 0.789003
Target:  5'- ---uGG-CAGGGuugUUGUCCCUCCCUg -3'
miRNA:   3'- guuuCCaGUCCCug-GACAGGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 157516 0.66 0.780105
Target:  5'- cCGGAGGUCcucccGGGACa----CCCCCCUg -3'
miRNA:   3'- -GUUUCCAGu----CCCUGgacagGGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 65863 0.66 0.780105
Target:  5'- aGAGGGUCGGGGACCaGgCagaUUCCCa -3'
miRNA:   3'- gUUUCCAGUCCCUGGaCaGg--GGGGGa -5'
4032 3' -59.6 NC_001650.1 + 23931 0.66 0.771991
Target:  5'- cCAGcAGGUCAGGGGCCagaagaguacacgggGUCCCCg--- -3'
miRNA:   3'- -GUU-UCCAGUCCCUGGa--------------CAGGGGggga -5'
4032 3' -59.6 NC_001650.1 + 135878 0.66 0.771083
Target:  5'- --cAGGUCguggucggagagGGGGGCCUcugCCCgCCCCUc -3'
miRNA:   3'- guuUCCAG------------UCCCUGGAca-GGG-GGGGA- -5'
4032 3' -59.6 NC_001650.1 + 32164 0.66 0.771083
Target:  5'- uGGGGGUCGGGGgcggGCCUcgcGUCgUCCUCUg -3'
miRNA:   3'- gUUUCCAGUCCC----UGGA---CAGgGGGGGA- -5'
4032 3' -59.6 NC_001650.1 + 117024 0.66 0.770175
Target:  5'- ---uGGUCcacaaacGGGGACCUGgCCgCCgCCCUg -3'
miRNA:   3'- guuuCCAG-------UCCCUGGACaGG-GG-GGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.